Detailed information NTG0852900

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: V6T01_RS00510
• Genome accession: NZ_CP145856
• Coordinates: 81410..83860 (+)
• Length: 816 a.a.
• NCBI ID: WP_037599755.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain KSS1
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 76410..88860

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6T01_RS00485 (V6T01_00485)	ahpC	77328..77888 (-)	561	WP_347111621.1	alkyl hydroperoxide reductase subunit C	-
V6T01_RS00490 (V6T01_00490)	rpsB	78161..78928 (+)	768	WP_002886342.1	30S ribosomal protein S2	-
V6T01_RS00495 (V6T01_00495)	tsf	79039..80079 (+)	1041	WP_002886343.1	translation elongation factor Ts	-
V6T01_RS00500 (V6T01_00500)	-	80185..80655 (-)	471	WP_004182164.1	COG2426 family protein	-
V6T01_RS00505 (V6T01_00505)	-	80954..81409 (+)	456	WP_002889615.1	CtsR family transcriptional regulator	-
V6T01_RS00510 (V6T01_00510)	clpC	81410..83860 (+)	2451	WP_037599755.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
V6T01_RS00515 (V6T01_00515)	pbp3	83990..85246 (-)	1257	WP_410541262.1	D-alanyl-D-alanine carboxypeptidase PBP3	-
V6T01_RS00520 (V6T01_00520)	pbp3	85391..86638 (-)	1248	WP_060973205.1	D-alanyl-D-alanine carboxypeptidase PBP3	-

Sequence

Protein

• Length: 816 a.a.
• Molecular weight: 90253.58 Da
• Isoelectric Point: 5.9166

>NTDB_id=852900 V6T01_RS00510 WP_037599755.1 81410..83860(+) (clpC) [Streptococcus salivarius strain KSS1]
MTTYSRKMQAIFHRAQLEAERFGSPFLETWHVLLAMVEVPGSVAYLTFTDFEDRIRAEEIETAAVLAMEKSPKDLSESDI
IDLRAQSHALEAMLQEAEGIAGVTGAVEVGSEHVLMAFLLHKDLMVCRLLEVAGFQYKDDSDKPRIIDLRRSLERYAGLS
KQDLKAIHDLRKPKKSKTSGNFANMMQPPQSSTGELADYTKDLTAVAESGALDPVIGREKEISRMIQVLSRKTKNNPVLV
GEAGVGKTALALGLAQRIASGEVPFELADMRILELDMMSVVAGTRFRGDFEERMNQIIDEIEADGKIILFIDELHTIIGS
GSGIDSTLDAANILKPALARGTLHMVGATTQAEYQKHIEKDAALSRRFAKITIEEPSVAEAIDILKGLRSSYEDYHRVTI
TDEAVETAVKAAHRYLTSKNLPDSAIDLLDEASATVQGRIKKEAKREITPLDEALLSGDMKSAVKQYKASQKAKLPKPAL
VDADQIMQTLSRLSGIPVEKMTQADSKRYLNLEAELHKRVIGQDEAVSAISRAIRRNQSGIRTGKRPIGSFMFLGPTGVG
KTELAKALAEVLFDDESALLRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNIL
LQVLDDGVLTDSRGRKVDFSNTIIIMTSNLGATALRDDKTVGFGVQDISHNHQAMQSRIMEELKKAYRPEFINRIDEKVV
FHSLEEEQLREIVKIMVKPLVSALAEKGIDLKFQPAALKHLAKDGYDVEMGARPLRRTIQTQVEDKLSELLLGGQVVSGQ
TLKIGCSKDKLTFTVV

Nucleotide

• Length: 2451 bp

>NTDB_id=852900 V6T01_RS00510 WP_037599755.1 81410..83860(+) (clpC) [Streptococcus salivarius strain KSS1]
ATGACGACATATTCAAGAAAAATGCAGGCCATTTTCCATCGTGCGCAGCTTGAGGCAGAGCGTTTTGGAAGTCCTTTTCT
GGAGACTTGGCATGTGCTTCTGGCTATGGTTGAGGTTCCAGGATCTGTAGCCTACCTAACATTTACTGATTTTGAGGACC
GTATTCGTGCGGAAGAGATTGAGACAGCCGCTGTACTAGCGATGGAGAAAAGTCCAAAAGACTTGTCTGAATCAGATATT
ATCGATTTACGTGCACAGTCACATGCTTTAGAGGCTATGTTGCAAGAGGCAGAGGGAATTGCTGGTGTGACTGGTGCTGT
AGAGGTAGGGTCTGAACATGTATTGATGGCCTTTCTCCTTCATAAGGATTTGATGGTTTGTCGTCTCCTTGAAGTTGCTG
GTTTTCAATATAAGGATGACAGCGATAAGCCTCGTATTATCGATTTACGACGTTCTTTGGAGCGTTATGCAGGTCTTAGT
AAGCAAGATTTGAAGGCCATTCATGACCTTCGTAAGCCTAAAAAATCAAAGACATCAGGAAATTTTGCTAATATGATGCA
GCCTCCTCAATCTTCTACTGGGGAGTTGGCAGATTATACCAAGGACTTAACGGCAGTAGCCGAGTCAGGTGCTCTTGATC
CTGTTATTGGACGTGAGAAAGAGATTTCACGCATGATTCAGGTTTTGAGTCGTAAAACGAAGAATAACCCAGTTCTTGTA
GGTGAAGCAGGTGTTGGTAAGACGGCACTTGCGCTTGGCTTGGCACAGCGTATTGCTTCAGGCGAAGTACCTTTTGAGCT
GGCTGATATGCGTATCTTAGAGCTTGATATGATGAGTGTGGTTGCAGGAACACGTTTCCGTGGTGATTTCGAAGAACGTA
TGAATCAAATCATTGATGAGATTGAAGCTGATGGAAAAATCATTCTCTTTATTGACGAATTGCATACGATTATTGGTTCA
GGTTCAGGTATTGATAGTACCTTGGATGCGGCTAATATTTTGAAACCTGCTCTAGCACGTGGAACTCTTCATATGGTTGG
AGCTACCACTCAAGCAGAGTATCAAAAGCATATTGAGAAAGATGCAGCTCTTTCTCGCCGTTTTGCTAAGATTACAATTG
AGGAGCCAAGTGTAGCTGAGGCGATTGATATTCTAAAAGGCCTACGTTCGTCTTATGAAGACTATCATCGTGTAACGATT
ACTGATGAAGCGGTTGAGACAGCGGTCAAGGCGGCACATCGTTATTTGACGAGTAAAAACTTGCCTGACTCTGCCATTGA
CCTTTTAGATGAAGCGAGTGCAACTGTTCAAGGTCGTATTAAAAAAGAAGCCAAACGTGAGATAACGCCTTTGGATGAAG
CGCTTCTTTCTGGTGATATGAAGTCTGCTGTTAAACAATATAAGGCTAGCCAAAAAGCAAAATTACCAAAACCTGCCTTG
GTAGATGCGGATCAGATTATGCAAACCCTTAGTCGTCTATCAGGTATTCCTGTTGAGAAGATGACTCAGGCAGATAGTAA
GCGTTACTTGAATCTGGAAGCAGAGCTTCACAAACGTGTTATTGGTCAAGATGAAGCAGTTTCAGCGATTAGTCGTGCTA
TTCGTCGTAACCAGTCGGGTATTCGTACTGGCAAACGTCCGATTGGTTCCTTCATGTTCCTTGGACCTACTGGTGTTGGT
AAGACAGAATTGGCCAAGGCATTGGCGGAAGTTCTCTTTGATGATGAGTCAGCTTTGCTTCGCTTTGACATGTCAGAATA
CATGGAAAAATTTGCGGCTAGCCGACTTAACGGTGCTCCTCCAGGTTATGTTGGATACGATGAGGGCGGTGAGTTAACAG
AAAAAGTTCGTAATAAGCCTTACTCAGTTCTTCTCTTTGACGAGGTGGAAAAGGCTCACCCAGATATTTTCAATATTCTC
TTACAGGTTTTGGATGACGGTGTCTTGACGGATAGTCGAGGTCGTAAAGTTGACTTCTCAAATACCATTATCATTATGAC
TTCGAATTTGGGAGCGACTGCTCTTCGTGATGATAAGACTGTTGGTTTTGGAGTCCAAGACATTTCTCATAATCACCAAG
CTATGCAGTCACGTATCATGGAAGAACTTAAGAAGGCCTACCGCCCAGAGTTTATCAACCGTATTGATGAAAAGGTTGTC
TTCCATAGTTTAGAGGAAGAGCAGCTTCGTGAGATTGTCAAGATTATGGTAAAACCGTTGGTATCAGCTTTGGCTGAAAA
AGGGATTGACTTGAAATTCCAACCAGCTGCCCTCAAACATTTAGCTAAAGATGGCTATGATGTTGAGATGGGTGCTCGTC
CATTACGTCGCACGATTCAAACTCAGGTGGAGGATAAGTTATCTGAGCTCTTACTAGGTGGCCAAGTAGTTAGTGGACAA
ACCCTTAAGATCGGCTGCTCGAAAGATAAATTAACCTTTACAGTAGTGTAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (724-804)

• ATPase family associated with various cellular activities (AAA) (AAA) (238-370)

• AAA domain (Cdc48 subfamily) (AAA_2) (546-717)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (15-46)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (109-135)

• AAA lid domain (AAA_lid_9) (377-457)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus thermophilus LMG 18311	95.098	100	0.951
clpC	Streptococcus thermophilus LMD-9	94.975	100	0.95
clpC	Streptococcus mutans UA159	73.039	100	0.73
clpC	Streptococcus pneumoniae TIGR4	67.279	100	0.673
clpC	Streptococcus pneumoniae Rx1	67.279	100	0.673
clpC	Streptococcus pneumoniae D39	67.279	100	0.673
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	50.301	100	0.512
clpC	Bacillus subtilis subsp. subtilis str. 168	47.388	100	0.478
clpE	Streptococcus mutans UA159	47.604	76.716	0.365