Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   V6T01_RS00200 Genome accession   NZ_CP145856
Coordinates   25924..26697 (+) Length   257 a.a.
NCBI ID   WP_049527607.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 20924..31697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS00180 (V6T01_00180) mreD 21367..21891 (+) 525 WP_037599472.1 rod shape-determining protein MreD -
  V6T01_RS00185 (V6T01_00185) - 21976..23493 (+) 1518 WP_110980753.1 CHAP domain-containing protein -
  V6T01_RS00190 (V6T01_00190) - 23705..24670 (+) 966 WP_002886286.1 ribose-phosphate diphosphokinase -
  V6T01_RS00195 (V6T01_00195) - 24762..25937 (+) 1176 WP_410541275.1 pyridoxal phosphate-dependent aminotransferase -
  V6T01_RS00200 (V6T01_00200) recO 25924..26697 (+) 774 WP_049527607.1 DNA repair protein RecO Machinery gene
  V6T01_RS00205 (V6T01_00205) plsX 26909..27913 (+) 1005 WP_110980756.1 phosphate acyltransferase PlsX -
  V6T01_RS00210 (V6T01_00210) - 27913..28158 (+) 246 WP_004181960.1 phosphopantetheine-binding protein -
  V6T01_RS00215 (V6T01_00215) purC 28417..29124 (+) 708 WP_002886293.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29694.80 Da        Isoelectric Point: 4.9545

>NTDB_id=852893 V6T01_RS00200 WP_049527607.1 25924..26697(+) (recO) [Streptococcus salivarius strain KSS1]
MQKLESRGLVLFNRNYRENDKLVKIFTEQAGKRMFFVRGGGSGKLSAVIQPLTIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDAAIADGVADAQLFAFLEKTLELMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYAEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDDMKRKLRHFIDDLYDNYVGIHLKSKKFI
DNLNSWGHIMNKEDSAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=852893 V6T01_RS00200 WP_049527607.1 25924..26697(+) (recO) [Streptococcus salivarius strain KSS1]
ATGCAGAAGCTTGAGAGTAGAGGGCTTGTCCTCTTCAATCGTAATTATCGTGAGAACGATAAGCTAGTTAAGATTTTTAC
CGAGCAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTAAGTGCTGTGATTCAACCTTTAACCA
TCGCTGAATTCATGATGACTGTAAATGATGAGGGCTTATCTTTCATAGAGGATTATAGCCAGGCAGAGTCCTTCAAGGAA
ATTACAAGCGATATTTTCAAGCTGTCTTATGCGACTTATTTAGCTGCTCTGACGGATGCTGCTATTGCTGACGGTGTGGC
AGATGCGCAATTATTTGCATTTTTGGAGAAGACGCTTGAATTAATGGAAGAAGGCTTGGATTATGAAATCTTGACTAATA
TCTTTGAGATTCAGGTTTTAGACCGTTTCGGTGTACGATTGAATTTTCACGAGTGTGTCTTTTGCCATCGTGTGGGGCTT
CCTTTTGATTTTTCGTATAAGTTCTCGGGGCTACTTTGTCCAAATCACTATGCAGAGGATGAAAGGCGTAGTCACTTGGA
TCCTAATGTACCTTATCTTTTAGATCGTTTTCAGGGGCTTTCTTTTGAGGAATTGAGAAGCATATCTGTTAAGGATGACA
TGAAACGAAAGCTACGACATTTTATTGATGACCTCTATGATAATTATGTTGGAATACATCTTAAAAGTAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAATAAAGAAGATAGTGCTGACTAG

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

62.846

98.444

0.619