Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   QYE83_RS06020 Genome accession   NZ_CP129372
Coordinates   1275904..1276971 (+) Length   355 a.a.
NCBI ID   WP_002446533.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain CCSH-141     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1270904..1281971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE83_RS05990 - 1271322..1272782 (+) 1461 WP_002446538.1 rhomboid family intramembrane serine protease -
  QYE83_RS05995 - 1272766..1272966 (+) 201 WP_002446537.1 YqgQ family protein -
  QYE83_RS06000 - 1272966..1273952 (+) 987 WP_002446536.1 ROK family glucokinase -
  QYE83_RS06005 - 1273952..1274278 (+) 327 WP_001831234.1 MTH1187 family thiamine-binding protein -
  QYE83_RS06010 - 1274278..1274901 (+) 624 WP_150871737.1 MBL fold metallo-hydrolase -
  QYE83_RS06015 comGA 1274958..1275932 (+) 975 WP_002446534.1 competence type IV pilus ATPase ComGA Machinery gene
  QYE83_RS06020 comGB 1275904..1276971 (+) 1068 WP_002446533.1 competence type IV pilus assembly protein ComGB Machinery gene
  QYE83_RS06025 comGC 1276989..1277306 (+) 318 WP_002446532.1 competence type IV pilus major pilin ComGC Machinery gene
  QYE83_RS06030 comGD 1277296..1277733 (+) 438 WP_002446531.1 competence type IV pilus minor pilin ComGD -
  QYE83_RS06035 - 1277720..1278013 (+) 294 WP_002446530.1 hypothetical protein -
  QYE83_RS06040 comGF 1277937..1278428 (+) 492 WP_002446529.1 competence type IV pilus minor pilin ComGF -
  QYE83_RS06045 - 1278593..1279105 (+) 513 WP_002446528.1 shikimate kinase -
  QYE83_RS06050 gcvT 1279323..1280414 (+) 1092 WP_301555490.1 glycine cleavage system aminomethyltransferase GcvT -
  QYE83_RS06055 gcvPA 1280434..1281780 (+) 1347 WP_002446526.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 42350.56 Da        Isoelectric Point: 10.0598

>NTDB_id=852893 QYE83_RS06020 WP_002446533.1 1275904..1276971(+) (comGB) [Staphylococcus epidermidis strain CCSH-141]
MKKLSINTFKYKRNKYLTEIQSINLLQRLHQLLSHGFTLYQSFKFLNSYFKYKERTINEKIIQHLQNGATCYDILKMIGY
PELVLLQIKFAENYGNIDEALVDTVQYMKRNLKAKKRLIKTLQYPVALISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLLTLIITLLPKLTFIFIFMSGIAFFITYKFYYYLPIERKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVQIYRNEQDNEFLKFLGNCLFKEANRGLPLPTILMNLQCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=852893 QYE83_RS06020 WP_002446533.1 1275904..1276971(+) (comGB) [Staphylococcus epidermidis strain CCSH-141]
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAAACTTATTACA
GAGATTACATCAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCTTATTTTAAATATAAAG
AACGAACAATAAATGAAAAGATTATCCAACATCTACAAAACGGCGCTACATGTTATGATATTTTAAAAATGATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGTAACATTGATGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATTTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTGCATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAATCTACTAACTCTTATTATTACCCTTCTTCCCAAGCTAACTTTCATTTTTATCTTTATGAGTGGTATAGCATT
TTTTATCACTTATAAATTTTACTATTATCTACCAATTGAGAGAAAATTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAGCTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCAAATATATCGTAATGAGCAAGATAACGAATTTCTTAAATTTCTGGGTAATTGTCTTTTTAAAGAAGCTAATAG
AGGGCTCCCGTTACCTACTATATTAATGAATCTACAATGTTTTCAAAATGATTTAATTAAATTCATAGAACAAGGAGAGA
AAAATGGAAAATTAGATATAGAATTAAAATTATACAGTCAAATGTTATTACAGCAATTTGAGGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATTTTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTCGAACTTATGCAAACAATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(26-145)

Type II secretion system (T2SS), protein F (T2SSF)

(225-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

48.596

100

0.487
  comGB Staphylococcus aureus N315

48.596

100

0.487