Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QYE84_RS11935 Genome accession   NZ_CP129369
Coordinates   2416870..2418234 (-) Length   454 a.a.
NCBI ID   WP_193624878.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain CJFE-402M     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2411870..2423234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE84_RS11920 cysE 2412794..2413423 (-) 630 WP_172458793.1 serine O-acetyltransferase -
  QYE84_RS11925 gltX 2413878..2415332 (-) 1455 WP_053017885.1 glutamate--tRNA ligase -
  QYE84_RS11930 - 2415777..2416844 (-) 1068 WP_046309758.1 PIN/TRAM domain-containing protein -
  QYE84_RS11935 radA 2416870..2418234 (-) 1365 WP_193624878.1 DNA repair protein RadA Machinery gene
  QYE84_RS11940 - 2418457..2420931 (-) 2475 WP_053018509.1 ATP-dependent Clp protease ATP-binding subunit -
  QYE84_RS11945 - 2420947..2421954 (-) 1008 WP_053017888.1 protein arginine kinase -
  QYE84_RS11950 - 2421947..2422510 (-) 564 WP_053018507.1 UvrB/UvrC motif-containing protein -
  QYE84_RS11955 - 2422533..2422994 (-) 462 WP_301402295.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49872.16 Da        Isoelectric Point: 6.9552

>NTDB_id=852871 QYE84_RS11935 WP_193624878.1 2416870..2418234(-) (radA) [Staphylococcus haemolyticus strain CJFE-402M]
MAKKKVIFECMACGYQSPKWMGKCPNCGSWNQMEEIVEKASNPKHGVKTSTSSAKVQKLNDIKNEVTPRVQTESKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKLNVLYITGEESLNQTKLRADRLDEDSSNLNVLAETDLEVIHQTVQ
QAQPDILVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVQNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVR
RVSRIEQRVQEAAKLGFERVIIPQTNIGGWQFPEGIKVVGVSTVHDTLKYAFKS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=852871 QYE84_RS11935 WP_193624878.1 2416870..2418234(-) (radA) [Staphylococcus haemolyticus strain CJFE-402M]
TTGGCCAAAAAGAAAGTAATTTTTGAGTGTATGGCTTGCGGCTATCAATCTCCAAAATGGATGGGAAAGTGTCCTAATTG
TGGGTCATGGAATCAAATGGAGGAAATTGTTGAAAAAGCTTCAAATCCCAAACACGGCGTAAAGACATCAACATCTAGTG
CAAAAGTCCAGAAATTAAATGATATTAAGAATGAAGTGACACCGAGAGTTCAGACAGAATCAAAAGAGTTCAACCGCGTT
TTAGGCGGTGGCATTGTAAGTGGTTCTTTAGTGTTAATAGGTGGAGATCCTGGTATTGGTAAATCAACGTTATTACTGCA
AATTTGTGCATCATTGTCACAAAAATTAAATGTACTGTATATTACAGGTGAAGAATCACTAAATCAAACTAAATTACGTG
CCGATCGACTAGATGAAGATTCGAGTAATTTAAATGTGTTAGCAGAAACAGATTTAGAGGTAATACATCAAACAGTTCAA
CAAGCACAACCTGATATTTTAGTTGTGGATTCTATTCAAACAATATATCATCCTGAAATTAGTTCGGCACCTGGTTCTGT
GTCTCAAGTTAGAGAGAGTACACAGAGTTTAATGAATATTGCTAAACAAATGAATATTGCAACATTTATCGTCGGACATG
TTACAAAAGAAGGTCAAATTGCAGGACCGCGTCTATTAGAACATATGGTTGATACTGTACTGTACTTTGAGGGAGATGAG
CATCATGCTTATCGTATCTTGAGAGCGGTTAAGAACCGTTTTGGTTCTACTAATGAAATGGGCATTTTTGAGATGAAACA
AAGCGGATTAAAAGGCGTTCAAAATCCTTCTGAAATGTTCTTAGAGGAACGTTCTACCAATGTGCCGGGATCAACGATTG
TAGCAACAATGGAAGGTACACGACCTCTATTAATAGAAGTTCAGGCCTTAGTGACGCCTACAACATTTAATAATCCTAGA
CGTATGGCAACGGGTATAGATCATAATCGTTTGAGTTTATTAATGGCTGTATTAGAGAAAAAAGAAAACTATTTATTACA
ACAACAAGATGCATATATTAAAGTAGCTGGTGGCGTTCGATTGACAGAGCCGGCAGTTGATTTAAGTGTTATAGTAGCAA
CAGCTTCAAGTTTTAAAGATAAAGCAGTAGATGGGCTTGATTGTTATATTGGAGAAGTAGGTTTGACCGGTGAAGTGAGA
CGTGTTTCTCGAATTGAACAACGTGTTCAAGAAGCAGCTAAATTAGGATTTGAACGTGTTATTATTCCACAGACAAATAT
CGGTGGATGGCAATTTCCTGAAGGCATTAAAGTAGTAGGAGTGTCTACAGTACATGATACACTAAAATATGCATTCAAAT
CGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-218)

Subunit ChlI of Mg-chelatase (ChlI)

(359-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.208

100

0.656
  radA Streptococcus pneumoniae Rx1

60.177

99.559

0.599
  radA Streptococcus pneumoniae D39

60.177

99.559

0.599
  radA Streptococcus pneumoniae R6

60.177

99.559

0.599
  radA Streptococcus pneumoniae TIGR4

60.177

99.559

0.599
  radA Streptococcus mitis NCTC 12261

60.177

99.559

0.599
  radA Streptococcus mitis SK321

60.177

99.559

0.599