Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V6S24_RS15615 Genome accession   NZ_CP145718
Coordinates   2888107..2888736 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain S1-CAM-01-C     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2883107..2893736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S24_RS15600 (V6S24_15600) helD 2883349..2885403 (-) 2055 WP_000420536.1 DNA helicase IV -
  V6S24_RS15605 (V6S24_15605) yccF 2885526..2885972 (+) 447 WP_001261235.1 YccF domain-containing protein -
  V6S24_RS15610 (V6S24_15610) yccS 2885982..2888144 (+) 2163 WP_000875061.1 YccS family putative transporter -
  V6S24_RS15615 (V6S24_15615) sxy/tfoX 2888107..2888736 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  V6S24_RS15620 (V6S24_15620) sulA 2888955..2889464 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  V6S24_RS15625 (V6S24_15625) ompA 2889821..2890861 (+) 1041 WP_000750416.1 porin OmpA -
  V6S24_RS15630 (V6S24_15630) matP 2890936..2891388 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  V6S24_RS15635 (V6S24_15635) ycbZ 2891574..2893334 (+) 1761 WP_089622268.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=852858 V6S24_RS15615 WP_000839153.1 2888107..2888736(-) (sxy/tfoX) [Escherichia coli strain S1-CAM-01-C]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=852858 V6S24_RS15615 WP_000839153.1 2888107..2888736(-) (sxy/tfoX) [Escherichia coli strain S1-CAM-01-C]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1