Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   QYE84_RS04870 Genome accession   NZ_CP129369
Coordinates   1005601..1006317 (-) Length   238 a.a.
NCBI ID   WP_301402738.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain CJFE-402M     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1000601..1011317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE84_RS04850 - 1000641..1001885 (+) 1245 WP_193624787.1 ammonium transporter -
  QYE84_RS04855 - 1001986..1002945 (+) 960 WP_053018830.1 LacI family DNA-binding transcriptional regulator -
  QYE84_RS04860 - 1003030..1004514 (+) 1485 WP_053018831.1 sucrose-6-phosphate hydrolase -
  QYE84_RS04865 - 1004518..1005480 (+) 963 WP_053018832.1 carbohydrate kinase -
  QYE84_RS04870 agrA 1005601..1006317 (-) 717 WP_301402738.1 quorum-sensing response regulator AgrA Regulator
  QYE84_RS04875 agrC 1006336..1007619 (-) 1284 WP_053018833.1 quorum-sensing sensor histidine kinase AgrC -
  QYE84_RS04880 agrD 1007651..1007788 (-) 138 WP_011275303.1 cyclic lactone autoinducer peptide AgrD -
  QYE84_RS04885 - 1007791..1008357 (-) 567 WP_053018834.1 accessory gene regulator AgrB -
  QYE84_RS04890 - 1009087..1009872 (-) 786 WP_053018835.1 carbon-nitrogen family hydrolase -
  QYE84_RS04895 - 1010065..1010688 (-) 624 WP_301402742.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27827.78 Da        Isoelectric Point: 5.2189

>NTDB_id=852850 QYE84_RS04870 WP_301402738.1 1005601..1006317(-) (agrA) [Staphylococcus haemolyticus strain CJFE-402M]
MKIFICEDDVKQRENMVSIINNYIMIEEKPMEIALATDDPYEVIEKSKEMNDVGCYFLDIQLEADINGIKLGSEIRKYDP
IGNIIFVTSHSELTYLTFVYKVSAMDFIFKDDPSQLQSRIIDCLETAHTRLKLLSKESTVETIELKRGSNSIYVQYDDVM
FFEPSTKSHRLIAHLDNRQIEFYGNLKELAQLDERFFRCHNSFVVNRHNIESIDSKERIVNFKNGEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=852850 QYE84_RS04870 WP_301402738.1 1005601..1006317(-) (agrA) [Staphylococcus haemolyticus strain CJFE-402M]
ATGAAAATATTCATTTGTGAAGATGATGTAAAACAACGCGAAAATATGGTTTCAATTATTAATAATTACATTATGATTGA
AGAAAAACCTATGGAGATTGCGCTTGCAACAGACGATCCTTATGAAGTCATTGAAAAATCTAAAGAGATGAATGATGTCG
GATGTTACTTTCTTGATATTCAATTAGAGGCTGATATCAACGGTATTAAATTAGGTAGTGAAATTCGTAAGTATGACCCT
ATTGGAAATATCATATTCGTTACAAGTCATAGTGAGTTAACGTACCTAACCTTTGTTTACAAAGTGTCAGCAATGGATTT
TATCTTTAAAGATGATCCAAGCCAATTACAGTCAAGAATTATTGATTGCTTAGAAACTGCACACACTCGCTTAAAATTAT
TATCTAAAGAAAGTACTGTTGAGACGATTGAATTGAAACGAGGAAGTAATTCAATTTATGTTCAATATGATGACGTAATG
TTTTTCGAACCATCTACAAAATCACATCGATTAATCGCACATTTAGATAATCGTCAAATTGAGTTTTATGGCAATTTAAA
AGAACTTGCACAACTTGATGAGCGGTTCTTTAGATGTCACAACAGCTTCGTTGTTAATAGACATAATATTGAATCCATAG
ATTCAAAAGAACGTATTGTCAATTTTAAAAACGGTGAGCACTGTTATGCTTCAGTTCGTAATGTTAAAAAAATATAG

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

87.815

100

0.878