Detailed information NTG0085283

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: QUD91_RS22060
• Genome accession: NZ_AP027256
• Coordinates: 4479609..4480634 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain JNE141411
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4474609..4485634

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QUD91_RS22030 (JNE141411_41920)	zapB	4474693..4474938 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
QUD91_RS22035 (JNE141411_41930)	rraA	4475023..4475508 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
QUD91_RS22040 (JNE141411_41940)	menA	4475601..4476527 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
QUD91_RS22045 (JNE141411_41950)	hslU	4476594..4477925 (-)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
QUD91_RS22050 (JNE141411_41960)	hslV	4477935..4478465 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
QUD91_RS22055 (JNE141411_41970)	ftsN	4478558..4479517 (-)	960	WP_000068834.1	cell division protein FtsN	-
QUD91_RS22060 (JNE141411_41980)	cytR	4479609..4480634 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
QUD91_RS22065 (JNE141411_41990)	priA	4480790..4482988 (-)	2199	WP_001315935.1	primosomal protein N'	Machinery gene
QUD91_RS22070 (JNE141411_42000)	rpmE	4483191..4483403 (+)	213	WP_000710769.1	50S ribosomal protein L31	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=85283 QUD91_RS22060 WP_000644904.1 4479609..4480634(-) (cytR) [Escherichia coli strain JNE141411]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=85283 QUD91_RS22060 WP_000644904.1 4479609..4480634(-) (cytR) [Escherichia coli strain JNE141411]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628