Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   V6S25_RS25635 Genome accession   NZ_CP145714
Coordinates   4672511..4674352 (-) Length   613 a.a.
NCBI ID   WP_032255548.1    Uniprot ID   -
Organism   Escherichia coli strain S1-CAM-01-A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4667511..4679352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S25_RS25610 (V6S25_25610) bioP 4668241..4669140 (-) 900 WP_001196238.1 biotin transporter -
  V6S25_RS25615 (V6S25_25615) yigL 4669216..4670016 (-) 801 WP_000285362.1 sugar/pyridoxal phosphate phosphatase YigL -
  V6S25_RS25620 (V6S25_25620) pldB 4670024..4671046 (-) 1023 WP_000487654.1 lysophospholipase L2 -
  V6S25_RS25625 (V6S25_25625) rhtB 4671157..4671777 (+) 621 WP_000171710.1 homoserine/homoserine lactone efflux protein -
  V6S25_RS25630 (V6S25_25630) rhtC 4671839..4672459 (-) 621 WP_000928824.1 threonine export protein RhtC -
  V6S25_RS25635 (V6S25_25635) recQ 4672511..4674352 (-) 1842 WP_032255548.1 ATP-dependent DNA helicase RecQ Machinery gene
  V6S25_RS25640 (V6S25_25640) pldA 4674485..4675354 (-) 870 WP_001259700.1 phospholipase A -
  V6S25_RS25645 (V6S25_25645) yigI 4675519..4675986 (+) 468 WP_001277142.1 acyl-CoA thioesterase YigI -
  V6S25_RS25650 (V6S25_25650) rarD 4676038..4676928 (+) 891 WP_000339104.1 EamA family transporter RarD -
  V6S25_RS25655 (V6S25_25655) yigG 4677023..4677403 (+) 381 WP_000944218.1 protein YigG -
  V6S25_RS25660 (V6S25_25660) yigF 4677417..4677779 (+) 363 Protein_4510 DUF2628 domain-containing protein -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 68720.87 Da        Isoelectric Point: 7.2544

>NTDB_id=852801 V6S25_RS25635 WP_032255548.1 4672511..4674352(-) (recQ) [Escherichia coli strain S1-CAM-01-A]
MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKD
QVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP
EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESY
YQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNC
DICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLRKLRKSIADESNVPPYVVFND
ATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVDGDDEEQSAA

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=852801 V6S25_RS25635 WP_032255548.1 4672511..4674352(-) (recQ) [Escherichia coli strain S1-CAM-01-A]
GTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCTAAACAGGTTTTACAAGAAACCTTTGGCTACCAACAGTTTCG
CCCCGGCCAGGAAGAAATTATCGACACTGTGCTTTCCGGTCGCGATTGCCTGGTCGTCATGCCCACCGGTGGCGGAAAAT
CCCTTTGCTATCAAATTCCTGCCTTATTGCTAAACGGCCTTACCGTGGTTGTTTCACCGCTGATTTCGTTGATGAAAGAT
CAGGTGGATCAACTGCAAGCCAACGGCGTGGCGGCGGCGTGCCTTAACTCGACGCAAACCCGCGAACAGCAACTTGAAGT
GATGACAGGCTGCCGCACCGGGCAAATTCGCTTACTGTATATCGCCCCGGAACGCCTGATGCTGGATAACTTTCTTGAGC
ATCTGGCGCACTGGAATCCGGTGTTATTAGCCGTCGATGAAGCGCACTGTATCTCCCAATGGGGCCACGATTTCCGCCCG
GAATATGCCGCGCTCGGTCAGTTGCGCCAGCGGTTCCCGACGCTGCCGTTTATGGCGCTGACCGCCACAGCCGACGACAC
CACGCGCCAGGATATCGTGCGCCTGCTGGGGCTGAACGATCCGCTGATTCAAATCAGCAGTTTTGACCGTCCGAATATTC
GCTACATGCTGATGGAGAAGTTCAAACCGCTCGATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATT
ATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCA
TGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGAAAAATTCCAGCGCGATGACCTGCAAATTGTGGTGGCGACGG
TGGCGTTCGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTAT
TATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCCGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTG
GCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAGCGCCACAAACTCAATGCGATGGGCGCGT
TTGCCGAAGCGCAAACTTGCCGTCGTCTGGTATTGCTGAACTATTTTGGCGAAGGGCGTCAGGAGCCGTGCGGGAACTGC
GATATCTGCCTCGATCCGCCGAAACAGTACGACGGTTCAACCGATGCTCAGATTGCCCTTTCCACCATTGGTCGTGTGAA
TCAGCGGTTTGGGATGGGTTATGTGGTGGAAGTGATTCGTGGTGCTAATAACCAGCGTATCCGCGACTATGGTCATGACA
AACTGAAAGTCTATGGCATGGGCCGTGATAAAAGCCATGAACATTGGGTGAGCGTGATCCGCCAGCTGATTCACCTCGGC
CTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGCTGCGCGGCGAATCCTC
TTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATCGCA
AACTGTTCGCCAAATTACGCAAACTGCGTAAATCGATAGCCGATGAAAGTAATGTCCCGCCGTACGTGGTGTTTAACGAC
GCAACCTTGATTGAGATGGCTGAACAGATGCCGATCACCGCCAGCGAAATGCTCAGCGTTAACGGCGTTGGGATGCGCAA
GCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGCAGTCAGCAGCAT
AA

Domains

Predicted by InterProScan.

RQC domain (RQC)

(406-514)

RecQ zinc-binding (RecQ_Zn_bind)

(343-404)

Helicase conserved C-terminal domain (Helicase_C)

(223-330)

HRDC domain (HRDC)

(533-599)

DEAD/DEAH box helicase (DEAD)

(28-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.203

96.574

0.388