Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V6S25_RS17905 Genome accession   NZ_CP145714
Coordinates   3063811..3064440 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain S1-CAM-01-A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3058811..3069440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S25_RS17890 (V6S25_17890) helD 3059053..3061107 (-) 2055 WP_032255448.1 DNA helicase IV -
  V6S25_RS17895 (V6S25_17895) yccF 3061230..3061676 (+) 447 WP_001261235.1 YccF domain-containing protein -
  V6S25_RS17900 (V6S25_17900) yccS 3061686..3063848 (+) 2163 WP_000875015.1 YccS family putative transporter -
  V6S25_RS17905 (V6S25_17905) sxy/tfoX 3063811..3064440 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  V6S25_RS17910 (V6S25_17910) sulA 3064659..3065168 (+) 510 Protein_3014 SOS-induced cell division inhibitor SulA -
  V6S25_RS17915 (V6S25_17915) ompA 3065525..3066565 (+) 1041 WP_032255461.1 porin OmpA -
  V6S25_RS17920 (V6S25_17920) matP 3066641..3067093 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  V6S25_RS17925 (V6S25_17925) ycbZ 3067279..3069039 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=852774 V6S25_RS17905 WP_000839153.1 3063811..3064440(-) (sxy/tfoX) [Escherichia coli strain S1-CAM-01-A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=852774 V6S25_RS17905 WP_000839153.1 3063811..3064440(-) (sxy/tfoX) [Escherichia coli strain S1-CAM-01-A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1