Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   QYE86_RS14720 Genome accession   NZ_CP129360
Coordinates   2919238..2920866 (-) Length   542 a.a.
NCBI ID   WP_044291473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CKMM-401M     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2919238..2943636 2919238..2920866 within 0


Gene organization within MGE regions


Location: 2919238..2943636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE86_RS14720 ccrB 2919238..2920866 (-) 1629 WP_044291473.1 recombinase family protein Machinery gene
  QYE86_RS14725 ccrA 2920887..2922236 (-) 1350 WP_044291476.1 recombinase family protein Machinery gene
  QYE86_RS14730 - 2922427..2922705 (-) 279 WP_044291478.1 hypothetical protein -
  QYE86_RS14735 - 2922775..2924574 (-) 1800 WP_301557832.1 DUF927 domain-containing protein -
  QYE86_RS14740 - 2924702..2926129 (-) 1428 WP_044291483.1 DUF6038 family protein -
  QYE86_RS14745 - 2926246..2927010 (+) 765 WP_044291485.1 DUF6414 family protein -
  QYE86_RS14750 - 2927000..2928115 (+) 1116 WP_052502247.1 AAA family ATPase -
  QYE86_RS14755 - 2928261..2928938 (+) 678 WP_044291487.1 hypothetical protein -
  QYE86_RS14760 - 2929186..2929461 (+) 276 WP_044291488.1 hypothetical protein -
  QYE86_RS14765 - 2929806..2930513 (-) 708 WP_301557833.1 alpha/beta fold hydrolase -
  QYE86_RS14770 - 2930625..2930909 (+) 285 WP_031794943.1 hypothetical protein -
  QYE86_RS14775 - 2931067..2931372 (+) 306 WP_000572394.1 hypothetical protein -
  QYE86_RS14780 - 2931405..2931740 (+) 336 WP_000312473.1 DUF961 family protein -
  QYE86_RS14785 - 2931744..2932046 (+) 303 WP_031774790.1 hypothetical protein -
  QYE86_RS14790 - 2932226..2933302 (+) 1077 WP_031774791.1 replication initiation factor domain-containing protein -
  QYE86_RS14795 - 2933483..2934559 (+) 1077 WP_031774792.1 conjugal transfer protein -
  QYE86_RS14800 - 2934564..2934824 (+) 261 WP_031774793.1 TcpD family membrane protein -
  QYE86_RS14805 - 2934830..2935219 (+) 390 WP_031774794.1 TcpE family conjugal transfer membrane protein -
  QYE86_RS14810 - 2935253..2937748 (+) 2496 WP_031774795.1 ATP-binding protein -
  QYE86_RS14815 - 2937760..2937978 (+) 219 WP_031774796.1 hypothetical protein -
  QYE86_RS14820 - 2937982..2938212 (+) 231 WP_031774797.1 hypothetical protein -
  QYE86_RS14825 - 2938209..2938541 (+) 333 WP_031774798.1 hypothetical protein -
  QYE86_RS14830 - 2938546..2939907 (+) 1362 WP_031774799.1 FtsK/SpoIIIE domain-containing protein -
  QYE86_RS14835 - 2939911..2940078 (+) 168 WP_179207330.1 hypothetical protein -
  QYE86_RS14840 - 2940097..2940336 (+) 240 WP_031774800.1 hypothetical protein -
  QYE86_RS14845 - 2940381..2940671 (+) 291 WP_031774801.1 hypothetical protein -
  QYE86_RS14850 - 2940687..2942618 (+) 1932 WP_031774802.1 CD3337/EF1877 family mobilome membrane protein -
  QYE86_RS14855 - 2942608..2943636 (+) 1029 WP_031774803.1 CHAP domain-containing protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62878.81 Da        Isoelectric Point: 9.7639

>NTDB_id=852767 QYE86_RS14720 WP_044291473.1 2919238..2920866(-) (ccrB) [Staphylococcus aureus strain CKMM-401M]
MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIKEYCNFHHFEVKDIYADRGISGKSMNRPELQRMLHDANEGLIDCVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDNKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSINSITYILVNPFYIGKIQFAK
YKDWNEKRRKGLNDKPIIADGKHPPIISQELWDKVQSRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVINQVLQRVNQENKVDIGALNHDIAYKQQQYD
EVHAKLDNLIKTIEDNPDLTTILKETIHKYETQLNDITNQINQLKQQQNQEKTSYNTKQLSAVLRRIFQNVESMDKSQLK
VLYLTVIDRIDIRKDEHRKKQFYVTLKLNHEITKQLFHNTPIDEVRLSTSSLFLSQTLYIHI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=852767 QYE86_RS14720 WP_044291473.1 2919238..2920866(-) (ccrB) [Staphylococcus aureus strain CKMM-401M]
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTTCGTGTATCAACGGAAATCCAAAGTACTGAAGGCTATAGTAT
CGATGGACAAATCAATCAAATCAAAGAATATTGTAACTTTCATCATTTCGAGGTCAAAGATATATACGCCGATCGTGGTA
TATCAGGAAAGTCTATGAACCGTCCTGAACTTCAACGTATGTTACATGATGCAAATGAGGGTCTCATCGATTGTGTCATG
GTATATAAAACAAATCGACTCGCACGTAATACATCAGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCTTATCTGAACGTATGGAAGTCAATACTTCTTCTGGTAAGCTCATGTTACAAATACTTGCGAGCTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAATGTATTCATGGGCCAAACTAGACGTGCACAAGAAGGCTACTATCAAGGGAAT
TTGCCACTAGGATATGACAAAATACCTGATAATAAACACGAACTGATGATTAATCAACATGAAGCGAATATCGTGAAATA
TATATTCGAATCTTATGCCAAAGGACATGGTTATCGTAAAATTGCCAATGCCCTCAATCACAAAGGATATGTTACTAAAA
AAGGTAATCCTTTTAGCATCAATTCAATAACCTATATCTTAGTCAATCCATTCTACATTGGTAAAATTCAATTTGCTAAG
TACAAAGATTGGAATGAAAAGCGTCGTAAAGGACTGAATGATAAACCAATTATAGCTGATGGTAAACACCCTCCTATTAT
TAGTCAAGAATTATGGGATAAAGTCCAATCACGCAAAAAACAGGTCAGTCAAAAACCTCAAGTTCATGGAAAAGGAACCA
ATCTATTAACGGGTATTATTCACTGCCCACAATGTGGTGCACCAATGGCAGCTAGTAACACAACGAACACATTGAAAGAT
GGTACCAAGAAGCGAATACGTTATTATTCTTGTAGTAACTTCCGAAACAAAGGTTCAAAGGTATGTTCTGCGAATAGTGT
TAGAGCTGATGTGATTGAGAAATACGTCATGGATCAAATACTTGAAATTGTCAAAAGTGATAAAGTCATTAACCAAGTCT
TACAACGTGTCAATCAGGAGAATAAAGTCGATATCGGTGCATTGAACCATGATATCGCTTATAAACAACAACAATACGAT
GAAGTCCATGCGAAACTAGACAACTTGATTAAAACAATCGAAGATAATCCAGACTTAACAACAATACTCAAAGAAACAAT
CCATAAATATGAAACACAACTGAATGACATTACGAATCAAATTAATCAACTGAAGCAACAACAAAATCAAGAGAAAACAT
CATATAATACGAAACAACTATCCGCTGTTTTACGTCGCATATTTCAAAACGTAGAATCCATGGATAAATCACAACTCAAA
GTGTTATATCTCACAGTCATTGACCGAATAGATATTCGTAAAGACGAACATCGTAAAAAGCAATTCTATGTCACATTAAA
ACTCAATCATGAAATCACTAAACAACTCTTCCATAATACCCCTATCGACGAAGTGCGCCTCAGCACTTCGTCTTTATTTT
TATCTCAAACACTCTATATTCATATATAA

Domains

Predicted by InterproScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Recombinase (Recombinase)

(180-280)

Resolvase, N terminal domain (Resolvase)

(11-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

85.24

100

0.852