Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V6S26_RS09990 Genome accession   NZ_CP145707
Coordinates   1742458..1743087 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain S1-CAM-02-A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1737458..1748087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S26_RS09970 (V6S26_09970) ycbZ 1737848..1739608 (-) 1761 WP_000156526.1 Lon protease family protein -
  V6S26_RS09975 (V6S26_09975) matP 1739794..1740246 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  V6S26_RS09980 (V6S26_09980) ompA 1740321..1741373 (-) 1053 WP_000750419.1 porin OmpA -
  V6S26_RS09985 (V6S26_09985) sulA 1741730..1742239 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  V6S26_RS09990 (V6S26_09990) sxy/tfoX 1742458..1743087 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  V6S26_RS09995 (V6S26_09995) yccS 1743050..1745212 (-) 2163 WP_000875015.1 YccS family putative transporter -
  V6S26_RS10000 (V6S26_10000) yccF 1745222..1745668 (-) 447 WP_001261235.1 YccF domain-containing protein -
  V6S26_RS10005 (V6S26_10005) helD 1745791..1747845 (+) 2055 WP_077501152.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=852677 V6S26_RS09990 WP_000839153.1 1742458..1743087(+) (sxy/tfoX) [Escherichia coli strain S1-CAM-02-A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=852677 V6S26_RS09990 WP_000839153.1 1742458..1743087(+) (sxy/tfoX) [Escherichia coli strain S1-CAM-02-A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1