Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   V6S27_RS10875 Genome accession   NZ_CP145703
Coordinates   2059766..2060992 (+) Length   408 a.a.
NCBI ID   WP_001161828.1    Uniprot ID   -
Organism   Escherichia coli strain S1-CAM-04-C     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2054766..2065992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S27_RS10860 (V6S27_10860) - 2055281..2056957 (+) 1677 WP_001329578.1 polysaccharide biosynthesis/export family protein -
  V6S27_RS10865 (V6S27_10865) kdsB 2056967..2057707 (+) 741 WP_000030761.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V6S27_RS10870 (V6S27_10870) - 2057704..2059731 (+) 2028 WP_001513436.1 capsular polysaccharide biosynthesis protein -
  V6S27_RS10875 (V6S27_10875) kpsS 2059766..2060992 (+) 1227 WP_001161828.1 capsular biosynthesis protein Regulator
  V6S27_RS10880 (V6S27_10880) - 2061148..2061924 (+) 777 WP_001513438.1 ABC transporter permease -
  V6S27_RS10885 (V6S27_10885) - 2061921..2062592 (+) 672 WP_000590810.1 ABC transporter ATP-binding protein -
  V6S27_RS10890 (V6S27_10890) - 2062596..2063687 (+) 1092 WP_001513439.1 stealth conserved region 3 domain-containing protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 48551.90 Da        Isoelectric Point: 10.0609

>NTDB_id=852598 V6S27_RS10875 WP_001161828.1 2059766..2060992(+) (kpsS) [Escherichia coli strain S1-CAM-04-C]
MQGNALTILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRNRQYQAYNQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWNEARCWVRAYWRKQLYRVTQRNVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNSLYDIVDLTYQGTLDDFWLTKFKPDIKLFKKFKEYLLFKTQINHVFYGNEKINKSINI
NSFIGSHK

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=852598 V6S27_RS10875 WP_001161828.1 2059766..2060992(+) (kpsS) [Escherichia coli strain S1-CAM-04-C]
ATGCAAGGTAATGCACTAACCATTTTATTATCGGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTTTTCAA
TGACGTTGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTGTTCAACGGCGGTGATCGTTTTTACTGCC
GCAATCGACAATACCAGGCTTACAACCAAACGCCGAAAGAATTTCCCGGTTGGTTGCGAGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTACACAAAGAAGCAAAACGGTGGGCTAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATAACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCAC
TACCGCGCGATCCTGATTTTTATCGTAAGTTGCCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGCATTGGCCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCGTTTTCCCCCTGGAATGAGGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAGGGTAACACAGCGTA
ATGTATTGCCGAGGTTAATGAATGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGAGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
GAGTTATTTAGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTAAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAGCCACTGAAAGTTATGGGAAATTCTCTTTATGATAT
CGTTGACTTAACATACCAAGGAACATTAGATGACTTCTGGTTAACAAAATTCAAACCAGACATAAAGTTGTTTAAAAAAT
TTAAAGAGTATTTATTGTTTAAAACACAAATAAATCATGTTTTTTATGGAAACGAGAAAATAAATAAGAGCATAAATATC
AATAGTTTTATTGGTTCACACAAATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.487

95.588

0.377