Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GSVR_RS01945 Genome accession   NZ_AP024469
Coordinates   375650..376999 (+) Length   449 a.a.
NCBI ID   WP_173201033.1    Uniprot ID   A0A6F9WZS5
Organism   Geobacter sp. SVR     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 370650..381999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSVR_RS01930 (GSVR_03850) rlmN 371888..373021 (-) 1134 WP_173201027.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  GSVR_RS01935 (GSVR_03860) - 373062..374009 (-) 948 WP_173201029.1 transglycosylase domain-containing protein -
  GSVR_RS01940 (GSVR_03870) - 374130..375323 (-) 1194 WP_173201031.1 FprA family A-type flavoprotein -
  GSVR_RS01945 (GSVR_03880) radA 375650..376999 (+) 1350 WP_173201033.1 DNA repair protein RadA Machinery gene
  GSVR_RS01950 (GSVR_03890) dksA 377078..377434 (+) 357 WP_173201035.1 RNA polymerase-binding protein DksA -
  GSVR_RS01955 (GSVR_03900) - 377468..378853 (+) 1386 WP_173201037.1 GAF domain-containing sensor histidine kinase -
  GSVR_RS01965 (GSVR_03910) - 379324..379692 (+) 369 WP_173201039.1 DUF134 domain-containing protein -
  GSVR_RS01970 (GSVR_03920) - 379736..380227 (+) 492 Protein_393 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  GSVR_RS01975 (GSVR_03930) - 380413..380859 (+) 447 WP_173201041.1 hypothetical protein -
  GSVR_RS01980 (GSVR_03940) - 381020..381286 (-) 267 WP_173201043.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 47425.97 Da        Isoelectric Point: 7.6682

>NTDB_id=85259 GSVR_RS01945 WP_173201033.1 375650..376999(+) (radA) [Geobacter sp. SVR]
MKQKTIFTCQKCGCQSPKWLGKCPDCGSWNSMAEEVTAAVGAVSPGAERSRPIPICDVPAQVESRLVTGIAELDRVLGGG
IVPGSLVLIGGDPGIGKSTLLLQAMHNLAEGSGPVLYVSGEESASQTRLRGERLKASHRQLLVLAENSLEAILGHAATLK
PRAMVVDSIQTIWTTALESAPGSVSQVRESAGKLMMMAKGSGVPVFIVGHVTKDGAIAGPRVLEHIVDTVLYFEGDGSHP
FRILRAVKNRFGSTNEIGVFEMKQEGLCDVPNPSELFLSERPLGASGSVVTTSLEGSRPLLVELQALVTQTSFGVPRRTT
IGVDHNRLALLVAVLEKKVGMHLTGQDIFLNAAGGARLNEPAADLAMIMAVASSHLDKAIAPQTVVLGEVGLAGEVRAIT
QPEQRIAEAEKLGFKTCILPAGNLKRLRSGKIKLHGVSSVDEAMQLLIQ

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=85259 GSVR_RS01945 WP_173201033.1 375650..376999(+) (radA) [Geobacter sp. SVR]
TTGAAACAGAAAACCATATTCACCTGTCAGAAGTGCGGCTGCCAATCTCCCAAGTGGCTGGGAAAATGTCCCGATTGCGG
TTCATGGAACAGCATGGCCGAAGAAGTTACCGCTGCAGTGGGCGCGGTTTCTCCGGGAGCGGAGCGTTCACGCCCGATAC
CGATCTGTGATGTCCCGGCACAGGTGGAATCCAGGCTTGTCACCGGCATTGCCGAACTGGACCGGGTCTTGGGCGGGGGA
ATCGTTCCCGGCTCGCTGGTGCTGATCGGTGGCGATCCAGGCATCGGAAAATCGACGCTGCTGCTGCAGGCCATGCATAA
TCTGGCAGAGGGGAGCGGCCCGGTTCTGTATGTTTCAGGGGAGGAATCCGCATCGCAAACCCGCTTGCGAGGGGAGCGGC
TGAAGGCCTCCCATCGCCAGTTGCTGGTGCTGGCGGAAAACTCGCTGGAGGCGATCCTGGGCCACGCCGCGACGCTCAAG
CCTCGGGCGATGGTGGTCGATTCGATCCAGACCATCTGGACAACAGCTCTGGAGTCGGCCCCGGGCAGCGTCAGCCAGGT
GCGGGAGTCGGCCGGCAAACTGATGATGATGGCCAAGGGCAGCGGAGTGCCTGTCTTCATTGTCGGACACGTTACCAAGG
ATGGCGCCATTGCCGGTCCGCGTGTGCTGGAACACATCGTCGACACGGTACTGTACTTCGAGGGGGACGGCAGCCACCCT
TTCCGTATCCTGCGGGCCGTCAAGAACCGTTTCGGTTCCACTAACGAGATCGGGGTGTTCGAGATGAAGCAGGAGGGGTT
GTGCGACGTGCCCAACCCGTCCGAGCTGTTCCTTTCGGAACGGCCGCTCGGAGCATCGGGGTCGGTGGTAACCACCTCCC
TGGAAGGCAGCCGTCCTTTGCTGGTGGAACTGCAGGCCCTGGTGACGCAAACGTCTTTCGGTGTTCCCCGCCGTACCACC
ATCGGGGTGGATCACAACCGTCTGGCGTTGCTGGTGGCCGTGCTGGAGAAGAAGGTCGGCATGCACCTGACCGGTCAGGA
CATTTTTCTGAATGCCGCCGGAGGCGCCCGGCTGAACGAGCCGGCTGCCGATCTGGCCATGATCATGGCGGTGGCTTCCA
GTCATCTGGACAAGGCGATCGCTCCCCAGACCGTGGTGCTGGGGGAGGTGGGACTGGCTGGCGAGGTGCGGGCCATCACG
CAGCCTGAGCAGCGTATTGCCGAGGCTGAAAAACTGGGATTCAAAACCTGCATTCTGCCGGCAGGCAATCTGAAACGGCT
CAGAAGTGGAAAAATCAAGCTGCACGGTGTCTCCTCGGTCGATGAGGCGATGCAGCTGCTGATTCAGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(61-215)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)

Subunit ChlI of Mg-chelatase (ChlI)

(338-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6F9WZS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

54.945

100

0.557
  radA Streptococcus pneumoniae Rx1

52.009

99.777

0.519
  radA Streptococcus pneumoniae D39

52.009

99.777

0.519
  radA Streptococcus pneumoniae R6

52.009

99.777

0.519
  radA Streptococcus pneumoniae TIGR4

52.009

99.777

0.519
  radA Streptococcus mitis NCTC 12261

52.009

99.777

0.519
  radA Streptococcus mitis SK321

51.786

99.777

0.517

Multiple sequence alignment