Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   QYR08_RS08940 Genome accession   NZ_CP129343
Coordinates   1866208..1867035 (+) Length   275 a.a.
NCBI ID   WP_010872899.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ-S1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1861208..1872035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR08_RS08915 (QYR08_08890) - 1861718..1862458 (+) 741 WP_010872894.1 WecB/TagA/CpsF family glycosyltransferase -
  QYR08_RS08920 (QYR08_08895) - 1862710..1863474 (+) 765 WP_010872895.1 iron uptake porin -
  QYR08_RS08925 (QYR08_08900) - 1863504..1863944 (+) 441 WP_010872896.1 hypothetical protein -
  QYR08_RS08930 (QYR08_08905) pilM 1864129..1865232 (+) 1104 WP_244788302.1 type IV pilus biogenesis protein PilM Machinery gene
  QYR08_RS08935 (QYR08_08910) pilN 1865314..1866168 (+) 855 WP_010872898.1 PilN domain-containing protein Machinery gene
  QYR08_RS08940 (QYR08_08915) pilO 1866208..1867035 (+) 828 WP_010872899.1 pilus assembly protein Machinery gene
  QYR08_RS08945 (QYR08_08920) pilQ 1867131..1869473 (+) 2343 WP_020862340.1 type IV pilus secretin PilQ Machinery gene
  QYR08_RS08950 (QYR08_08925) - 1869482..1870306 (-) 825 WP_010872901.1 FkbM family methyltransferase -
  QYR08_RS08955 (QYR08_08930) - 1870326..1871060 (-) 735 WP_010872902.1 FkbM family methyltransferase -

Sequence

Protein


Download         Length: 275 a.a.        Molecular weight: 30066.97 Da        Isoelectric Point: 3.9599

>NTDB_id=852529 QYR08_RS08940 WP_010872899.1 1866208..1867035(+) (pilO) [Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ-S1]
MTSYSEEYSSTTTIIDEEFDAGGNYPTAFGITFTPQVSGISLGILGLLAMGYVLLNFVMPALGEYQQLRQDEEAKQAQVD
QQSPEVLMRRLANAEVQLQEAQQRKATVLELYANSEDLNTILYNFNTLFVNRNVKLVSFLPQGDPVVISDDSLGANAKNQ
LKRQTYTISMTGGFSETLALIRDIERLQPLILMKNLRTSLVNPEFPVNVVRDGDTVQVQTDAPDILTTDLTLEVFMPLTP
EEIAALTPPPPPPGQEGQPPAEGQPPAEGQAAPAP

Nucleotide


Download         Length: 828 bp        

>NTDB_id=852529 QYR08_RS08940 WP_010872899.1 1866208..1867035(+) (pilO) [Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ-S1]
ATGACCAGCTACAGCGAAGAGTATTCATCAACGACAACAATTATTGATGAGGAATTTGATGCGGGAGGAAATTATCCAAC
TGCATTTGGGATAACCTTCACCCCCCAGGTAAGTGGCATTAGTTTAGGTATTCTTGGCTTGCTGGCCATGGGTTATGTTC
TGCTCAATTTTGTCATGCCAGCTTTGGGAGAATATCAACAACTAAGACAGGACGAAGAAGCTAAACAAGCTCAAGTGGAT
CAGCAGTCCCCGGAAGTGTTGATGCGTCGGCTAGCCAATGCGGAGGTGCAGTTACAGGAAGCTCAACAGCGTAAAGCGAC
AGTGTTGGAACTCTACGCCAATAGCGAGGACTTGAACACAATCCTCTATAACTTCAATACTCTATTCGTAAATAGAAACG
TGAAGTTAGTCAGCTTTTTGCCCCAGGGAGATCCGGTGGTAATCTCCGATGATAGTCTGGGGGCAAACGCAAAAAATCAG
CTTAAACGACAAACTTATACCATTTCCATGACGGGCGGTTTTAGTGAAACCCTGGCATTAATTCGGGATATTGAACGGCT
GCAACCGTTAATTTTGATGAAAAATTTGCGGACTAGCTTGGTTAATCCAGAATTTCCAGTCAATGTGGTTAGGGATGGTG
ACACTGTACAAGTGCAAACTGATGCGCCAGATATCCTAACTACGGATTTAACGTTGGAGGTGTTTATGCCATTAACCCCT
GAGGAGATTGCCGCCCTGACTCCTCCCCCGCCGCCGCCTGGACAGGAGGGTCAACCACCGGCTGAGGGACAACCTCCAGC
GGAAGGACAAGCGGCCCCGGCCCCCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Synechocystis sp. PCC 6803

100

100

1