Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QYM22_RS15345 Genome accession   NZ_CP129342
Coordinates   2928524..2929294 (-) Length   256 a.a.
NCBI ID   WP_046130027.1    Uniprot ID   A0AAE2EQE1
Organism   Bacillus glycinifermentans strain SRCM12603     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2923524..2934294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM22_RS15325 (QYM22_15325) - 2923582..2924394 (-) 813 WP_046130025.1 pyruvate, water dikinase regulatory protein -
  QYM22_RS15330 (QYM22_15330) - 2924420..2925058 (-) 639 WP_046130046.1 helix-turn-helix transcriptional regulator -
  QYM22_RS15335 (QYM22_15335) glyS 2925252..2927291 (-) 2040 WP_046130026.1 glycine--tRNA ligase subunit beta -
  QYM22_RS15340 (QYM22_15340) glyQ 2927284..2928171 (-) 888 WP_006637598.1 glycine--tRNA ligase subunit alpha -
  QYM22_RS15345 (QYM22_15345) recO 2928524..2929294 (-) 771 WP_046130027.1 DNA repair protein RecO Machinery gene
  QYM22_RS15350 (QYM22_15350) - 2929335..2929478 (-) 144 WP_065894752.1 YqzL family protein -
  QYM22_RS15355 (QYM22_15355) era 2929640..2930545 (-) 906 WP_046130029.1 GTPase Era -
  QYM22_RS15360 (QYM22_15360) - 2930526..2930936 (-) 411 WP_046130030.1 cytidine deaminase -
  QYM22_RS15365 (QYM22_15365) - 2931075..2931455 (-) 381 WP_046130031.1 diacylglycerol kinase family protein -
  QYM22_RS15370 (QYM22_15370) ybeY 2931433..2931909 (-) 477 WP_046130032.1 rRNA maturation RNase YbeY -
  QYM22_RS15375 (QYM22_15375) - 2931906..2933960 (-) 2055 WP_231947502.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29486.29 Da        Isoelectric Point: 9.0608

>NTDB_id=852494 QYM22_RS15345 WP_046130027.1 2928524..2929294(-) (recO) [Bacillus glycinifermentans strain SRCM12603]
MLTKCEGIVLRTNDYGETNKILTIMTREHGKIGVLARGAKKPNSRLSAISQPFLYASFLFRKSSGLGTLEQGEMLESMRN
IREDLFLTAHAAYIAELMDKGTDEKKPNPFLFELLLQSMRRLNEGTDPDIITNLIEVKMLGVMGLYPELDECVHCKSKDG
TFHFSIRDNGFICHRCFAKDPYRIPLSPASARLLRLLFYFDLSRLGNVSVKRETKEELKRVIQLYYDEYSGIFLKSRRFM
EQMDNMKKMLGNENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=852494 QYM22_RS15345 WP_046130027.1 2928524..2929294(-) (recO) [Bacillus glycinifermentans strain SRCM12603]
ATGCTGACGAAATGTGAAGGTATCGTCCTTCGTACCAACGATTACGGTGAAACCAATAAAATTTTGACAATCATGACAAG
GGAACATGGGAAAATCGGCGTGCTGGCCAGGGGGGCTAAAAAGCCGAACAGCCGCTTGTCCGCCATTTCCCAGCCCTTTC
TTTATGCTTCGTTTTTGTTTCGGAAATCATCCGGGCTCGGTACGCTTGAGCAGGGCGAGATGCTCGAAAGCATGCGGAAT
ATCCGGGAGGACCTTTTCTTAACGGCGCATGCCGCTTATATCGCCGAATTGATGGACAAAGGAACAGATGAAAAGAAACC
GAACCCGTTTTTATTCGAACTGCTTCTTCAGTCGATGAGGAGGCTGAATGAAGGCACGGATCCGGACATCATCACCAACC
TGATCGAAGTCAAAATGCTCGGCGTGATGGGCCTTTATCCGGAGCTTGATGAATGTGTCCACTGCAAAAGCAAAGACGGC
ACATTCCATTTCTCAATCCGTGACAACGGCTTCATCTGCCATCGCTGTTTCGCGAAAGACCCTTACAGGATCCCGCTGTC
ACCCGCTTCCGCCAGGCTCTTGAGGCTGCTTTTTTATTTTGATTTGTCAAGGCTCGGGAATGTATCGGTCAAACGGGAAA
CGAAGGAAGAGCTGAAGAGGGTTATCCAGCTTTACTATGACGAGTACTCGGGAATTTTTCTCAAATCGCGCCGCTTTATG
GAGCAGATGGACAATATGAAAAAAATGCTCGGCAACGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

76.953

100

0.77