Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   QYM22_RS15030 Genome accession   NZ_CP129342
Coordinates   2871991..2873028 (-) Length   345 a.a.
NCBI ID   WP_046129973.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain SRCM12603     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2866991..2878028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM22_RS14980 (QYM22_14980) tasA 2867031..2867825 (-) 795 WP_046129964.1 biofilm matrix protein TasA -
  QYM22_RS14985 (QYM22_14985) sipW 2867894..2868475 (-) 582 WP_046129965.1 signal peptidase I SipW -
  QYM22_RS14990 (QYM22_14990) tapA 2868472..2869197 (-) 726 WP_046129966.1 amyloid fiber anchoring/assembly protein TapA -
  QYM22_RS14995 (QYM22_14995) - 2869460..2869783 (+) 324 WP_046129967.1 DUF3889 domain-containing protein -
  QYM22_RS15000 (QYM22_15000) - 2869868..2870050 (-) 183 WP_046129968.1 YqzE family protein -
  QYM22_RS15005 (QYM22_15005) comGG 2870132..2870497 (-) 366 WP_046129969.1 competence type IV pilus minor pilin ComGG -
  QYM22_RS15010 (QYM22_15010) comGF 2870509..2870994 (-) 486 WP_082094061.1 competence type IV pilus minor pilin ComGF -
  QYM22_RS15015 (QYM22_15015) comGE 2870909..2871256 (-) 348 WP_046129970.1 competence type IV pilus minor pilin ComGE -
  QYM22_RS15020 (QYM22_15020) comGD 2871240..2871683 (-) 444 WP_046129971.1 competence type IV pilus minor pilin ComGD -
  QYM22_RS15025 (QYM22_15025) comGC 2871683..2871976 (-) 294 WP_046129972.1 competence type IV pilus major pilin ComGC Machinery gene
  QYM22_RS15030 (QYM22_15030) comGB 2871991..2873028 (-) 1038 WP_046129973.1 competence type IV pilus assembly protein ComGB Machinery gene
  QYM22_RS15035 (QYM22_15035) comGA 2873015..2874082 (-) 1068 WP_046129974.1 competence type IV pilus ATPase ComGA Machinery gene
  QYM22_RS15040 (QYM22_15040) - 2874239..2875078 (-) 840 WP_046129975.1 STAS domain-containing protein -
  QYM22_RS15050 (QYM22_15050) - 2875291..2875671 (-) 381 WP_046129976.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  QYM22_RS15055 (QYM22_15055) - 2875875..2876120 (+) 246 WP_046129977.1 DUF2626 domain-containing protein -
  QYM22_RS15060 (QYM22_15060) - 2876169..2876807 (-) 639 WP_046129978.1 MBL fold metallo-hydrolase -
  QYM22_RS15065 (QYM22_15065) - 2876948..2877121 (+) 174 WP_046129979.1 DUF2759 domain-containing protein -
  QYM22_RS15070 (QYM22_15070) - 2877192..2877506 (-) 315 WP_046129980.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 40075.47 Da        Isoelectric Point: 9.6632

>NTDB_id=852492 QYM22_RS15030 WP_046129973.1 2871991..2873028(-) (comGB) [Bacillus glycinifermentans strain SRCM12603]
MRLNNIRWPLRKQAELFEKLGEMMMNGYTLLDALNMLELQFDNKQKADISFGRKKLAEGYPVFQVLNMISFHRDAVSIVY
FAEQHGNLPFAFKQSGELLSRKVDQSEKLKKAAKYPSFLVATVCLIAYIMKSAIIPQFSAIYDSMNIETSFLTSFIFLFF
DSLPLFFMCILIIAVVLLTYYVSIFRKKAPEEKMALLVKIPLAGRILKLFNSYFLSLQLSNLLTSGLSVYDSLKAFESQP
FLPFFHKEAKRMIERLKQGEALEQMLDRHPFYEKDLSKAVAHGQLNGHLHRELYSYSQFLIDRLEKKAEKWTSMLQPLIY
GFTAAMILILYLSMLLPMYQMMNQL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=852492 QYM22_RS15030 WP_046129973.1 2871991..2873028(-) (comGB) [Bacillus glycinifermentans strain SRCM12603]
ATGAGACTGAATAACATAAGATGGCCCCTTCGGAAGCAGGCGGAGCTGTTTGAGAAGCTCGGCGAAATGATGATGAACGG
GTATACGCTTCTCGACGCTTTGAATATGCTTGAGCTGCAATTCGACAATAAGCAAAAAGCGGACATTTCATTCGGAAGAA
AAAAGCTGGCAGAAGGTTATCCCGTTTTTCAGGTTTTGAATATGATTTCGTTTCATAGGGACGCCGTCAGCATTGTTTAT
TTTGCCGAGCAGCACGGAAATTTGCCATTCGCTTTTAAGCAAAGCGGCGAATTGCTCAGCCGCAAAGTCGACCAGTCCGA
AAAATTGAAGAAGGCTGCAAAATATCCGTCATTCCTGGTTGCAACGGTCTGTCTCATCGCCTATATTATGAAATCGGCGA
TTATTCCGCAGTTTTCCGCGATCTATGACTCCATGAATATCGAAACATCTTTTCTGACCTCCTTCATCTTTTTATTTTTT
GACAGCCTCCCGCTGTTTTTTATGTGCATTCTCATCATTGCTGTGGTTTTGTTAACGTATTATGTTTCGATTTTCCGAAA
AAAAGCCCCGGAAGAAAAAATGGCCCTCCTCGTTAAAATCCCGCTGGCAGGCAGAATCCTCAAGTTATTCAACAGCTATT
TTTTATCGCTTCAGCTAAGCAATCTTTTAACATCGGGATTGTCTGTATATGACAGCTTAAAAGCGTTTGAGAGCCAGCCT
TTTTTGCCGTTTTTTCACAAGGAAGCAAAGCGCATGATCGAAAGGCTGAAACAGGGGGAAGCGCTGGAACAGATGCTGGA
CAGGCATCCGTTTTATGAAAAGGATCTCTCCAAAGCGGTGGCTCACGGTCAATTGAACGGTCATCTCCACAGGGAGCTAT
ATTCATACAGCCAATTTTTGATCGACCGGCTTGAAAAGAAAGCGGAAAAGTGGACAAGCATGCTTCAGCCTCTGATTTAC
GGATTTACCGCAGCCATGATTTTAATCCTCTATTTGTCGATGCTTTTGCCAATGTATCAAATGATGAATCAGTTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(217-337)

Type II secretion system (T2SS), protein F (T2SSF)

(18-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

54.489

93.623

0.51