Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   QYM22_RS15025 Genome accession   NZ_CP129342
Coordinates   2871683..2871976 (-) Length   97 a.a.
NCBI ID   WP_046129972.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain SRCM12603     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2866683..2876976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM22_RS14980 (QYM22_14980) tasA 2867031..2867825 (-) 795 WP_046129964.1 biofilm matrix protein TasA -
  QYM22_RS14985 (QYM22_14985) sipW 2867894..2868475 (-) 582 WP_046129965.1 signal peptidase I SipW -
  QYM22_RS14990 (QYM22_14990) tapA 2868472..2869197 (-) 726 WP_046129966.1 amyloid fiber anchoring/assembly protein TapA -
  QYM22_RS14995 (QYM22_14995) - 2869460..2869783 (+) 324 WP_046129967.1 DUF3889 domain-containing protein -
  QYM22_RS15000 (QYM22_15000) - 2869868..2870050 (-) 183 WP_046129968.1 YqzE family protein -
  QYM22_RS15005 (QYM22_15005) comGG 2870132..2870497 (-) 366 WP_046129969.1 competence type IV pilus minor pilin ComGG -
  QYM22_RS15010 (QYM22_15010) comGF 2870509..2870994 (-) 486 WP_082094061.1 competence type IV pilus minor pilin ComGF -
  QYM22_RS15015 (QYM22_15015) comGE 2870909..2871256 (-) 348 WP_046129970.1 competence type IV pilus minor pilin ComGE -
  QYM22_RS15020 (QYM22_15020) comGD 2871240..2871683 (-) 444 WP_046129971.1 competence type IV pilus minor pilin ComGD -
  QYM22_RS15025 (QYM22_15025) comGC 2871683..2871976 (-) 294 WP_046129972.1 competence type IV pilus major pilin ComGC Machinery gene
  QYM22_RS15030 (QYM22_15030) comGB 2871991..2873028 (-) 1038 WP_046129973.1 competence type IV pilus assembly protein ComGB Machinery gene
  QYM22_RS15035 (QYM22_15035) comGA 2873015..2874082 (-) 1068 WP_046129974.1 competence type IV pilus ATPase ComGA Machinery gene
  QYM22_RS15040 (QYM22_15040) - 2874239..2875078 (-) 840 WP_046129975.1 STAS domain-containing protein -
  QYM22_RS15050 (QYM22_15050) - 2875291..2875671 (-) 381 WP_046129976.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  QYM22_RS15055 (QYM22_15055) - 2875875..2876120 (+) 246 WP_046129977.1 DUF2626 domain-containing protein -
  QYM22_RS15060 (QYM22_15060) - 2876169..2876807 (-) 639 WP_046129978.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10641.49 Da        Isoelectric Point: 7.8560

>NTDB_id=852491 QYM22_RS15025 WP_046129972.1 2871683..2871976(-) (comGC) [Bacillus glycinifermentans strain SRCM12603]
MNEKGFTLIEMLVVMLVISILLLITIPNVTKHNQNIQKKGCEGLINMVQAQITAYQMDHDGKTPSLGELESEGYIKKNLA
CPNGKSIVISNGKAQTQ

Nucleotide


Download         Length: 294 bp        

>NTDB_id=852491 QYM22_RS15025 WP_046129972.1 2871683..2871976(-) (comGC) [Bacillus glycinifermentans strain SRCM12603]
TTGAATGAAAAGGGATTTACGCTGATAGAAATGCTGGTCGTTATGCTTGTCATCTCAATTCTGCTCTTAATTACGATCCC
GAATGTGACGAAGCATAATCAAAACATTCAAAAGAAAGGCTGTGAGGGATTGATCAATATGGTTCAGGCCCAAATTACCG
CGTATCAGATGGATCACGACGGGAAAACGCCAAGTCTTGGAGAGCTTGAATCAGAGGGATATATCAAGAAAAATTTGGCG
TGTCCTAATGGAAAATCGATCGTGATTTCAAATGGCAAGGCACAAACACAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

69.072

100

0.691
  comGC Staphylococcus aureus MW2

44.565

94.845

0.423
  comGC Staphylococcus aureus N315

44.565

94.845

0.423