Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QYM22_RS14975 Genome accession   NZ_CP129342
Coordinates   2866592..2866927 (+) Length   111 a.a.
NCBI ID   WP_096891855.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain SRCM12603     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2861592..2871927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM22_RS14955 (QYM22_14955) gcvT 2862057..2863151 (-) 1095 WP_046129959.1 glycine cleavage system aminomethyltransferase GcvT -
  QYM22_RS14960 (QYM22_14960) - 2863731..2865398 (+) 1668 WP_046129960.1 SNF2-related protein -
  QYM22_RS14965 (QYM22_14965) - 2865402..2866196 (+) 795 WP_046129961.1 YqhG family protein -
  QYM22_RS14970 (QYM22_14970) sinI 2866382..2866558 (+) 177 WP_046129962.1 anti-repressor SinI Regulator
  QYM22_RS14975 (QYM22_14975) sinR 2866592..2866927 (+) 336 WP_096891855.1 transcriptional regulator SinR Regulator
  QYM22_RS14980 (QYM22_14980) tasA 2867031..2867825 (-) 795 WP_046129964.1 biofilm matrix protein TasA -
  QYM22_RS14985 (QYM22_14985) sipW 2867894..2868475 (-) 582 WP_046129965.1 signal peptidase I SipW -
  QYM22_RS14990 (QYM22_14990) tapA 2868472..2869197 (-) 726 WP_046129966.1 amyloid fiber anchoring/assembly protein TapA -
  QYM22_RS14995 (QYM22_14995) - 2869460..2869783 (+) 324 WP_046129967.1 DUF3889 domain-containing protein -
  QYM22_RS15000 (QYM22_15000) - 2869868..2870050 (-) 183 WP_046129968.1 YqzE family protein -
  QYM22_RS15005 (QYM22_15005) comGG 2870132..2870497 (-) 366 WP_046129969.1 competence type IV pilus minor pilin ComGG -
  QYM22_RS15010 (QYM22_15010) comGF 2870509..2870994 (-) 486 WP_082094061.1 competence type IV pilus minor pilin ComGF -
  QYM22_RS15015 (QYM22_15015) comGE 2870909..2871256 (-) 348 WP_046129970.1 competence type IV pilus minor pilin ComGE -
  QYM22_RS15020 (QYM22_15020) comGD 2871240..2871683 (-) 444 WP_046129971.1 competence type IV pilus minor pilin ComGD -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12894.48 Da        Isoelectric Point: 5.2973

>NTDB_id=852490 QYM22_RS14975 WP_096891855.1 2866592..2866927(+) (sinR) [Bacillus glycinifermentans strain SRCM12603]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKSQEKE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=852490 QYM22_RS14975 WP_096891855.1 2866592..2866927(+) (sinR) [Bacillus glycinifermentans strain SRCM12603]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAATTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTTGATGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCGATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTACCAAAAATGGAAGAAGAG
TCAGGAAAAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946