Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QYM22_RS08810 Genome accession   NZ_CP129342
Coordinates   1681767..1682054 (+) Length   95 a.a.
NCBI ID   WP_046132238.1    Uniprot ID   A0AAE2EKV1
Organism   Bacillus glycinifermentans strain SRCM12603     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1676767..1687054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM22_RS08790 (QYM22_08790) - 1676979..1678598 (+) 1620 WP_046132242.1 ATP-binding cassette domain-containing protein -
  QYM22_RS08795 (QYM22_08795) - 1678925..1680157 (-) 1233 WP_046132240.1 aminopeptidase -
  QYM22_RS08800 (QYM22_08800) - 1680246..1680377 (-) 132 WP_096891714.1 protein YkpC -
  QYM22_RS08805 (QYM22_08805) mreBH 1680451..1681458 (-) 1008 WP_046132239.1 rod-share determining protein MreBH -
  QYM22_RS08810 (QYM22_08810) abrB 1681767..1682054 (+) 288 WP_046132238.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QYM22_RS08815 (QYM22_08815) - 1682256..1683578 (+) 1323 WP_046132237.1 ATP-binding protein -
  QYM22_RS08820 (QYM22_08820) - 1683664..1684329 (+) 666 WP_046132236.1 TrkA family potassium uptake protein -
  QYM22_RS08825 (QYM22_08825) ade 1684453..1686171 (+) 1719 WP_046132235.1 adenine deaminase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10625.43 Da        Isoelectric Point: 7.9575

>NTDB_id=852481 QYM22_RS08810 WP_046132238.1 1681767..1682054(+) (abrB) [Bacillus glycinifermentans strain SRCM12603]
MKSIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDKDKIVLKKYKPYGVCLITGEITSENREYGNGNITLSPDGAK
LLLEELKSALDQAKS

Nucleotide


Download         Length: 288 bp        

>NTDB_id=852481 QYM22_RS08810 WP_046132238.1 1681767..1682054(+) (abrB) [Bacillus glycinifermentans strain SRCM12603]
TTGAAATCCATAGGAGTTGTGAGAAAAGTAGATGAACTCGGCCGCATTGTGATGCCGATTGAATTGAGAAGGGCGCTTGA
TATCTCAATCAAGGACAGCATTGAATTTTTCGTTGACAAGGATAAAATCGTTTTGAAAAAATATAAACCTTACGGCGTTT
GTCTGATAACCGGAGAGATTACATCCGAAAACCGCGAATACGGAAACGGAAACATTACGCTCAGCCCGGATGGCGCCAAA
TTGCTTTTGGAAGAACTCAAAAGCGCGCTGGACCAGGCCAAATCGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

51.064

98.947

0.505