Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   QYM22_RS08680 Genome accession   NZ_CP129342
Coordinates   1656795..1657382 (+) Length   195 a.a.
NCBI ID   WP_046132264.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain SRCM12603     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1651795..1662382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM22_RS08650 (QYM22_08650) - 1652159..1652611 (+) 453 WP_046132270.1 flavodoxin -
  QYM22_RS08655 (QYM22_08655) dapD 1652720..1653430 (+) 711 WP_046132269.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  QYM22_RS08660 (QYM22_08660) - 1653499..1654623 (+) 1125 WP_046132268.1 N-acetyldiaminopimelate deacetylase -
  QYM22_RS08665 (QYM22_08665) - 1654689..1654934 (+) 246 WP_046132267.1 YkuS family protein -
  QYM22_RS08670 (QYM22_08670) ahpA 1655160..1655702 (+) 543 WP_046132266.1 biofilm-specific peroxidase AhpA -
  QYM22_RS08675 (QYM22_08675) - 1655790..1656248 (+) 459 WP_046132265.1 redoxin domain-containing protein -
  QYM22_RS08680 (QYM22_08680) rok 1656795..1657382 (+) 588 WP_046132264.1 transcriptional regulator Rok Regulator
  QYM22_RS08685 (QYM22_08685) - 1657511..1658470 (-) 960 WP_046132263.1 hypothetical protein -
  QYM22_RS08690 (QYM22_08690) - 1658622..1659209 (+) 588 WP_046132262.1 molybdenum cofactor guanylyltransferase -
  QYM22_RS08695 (QYM22_08695) - 1659328..1660341 (+) 1014 WP_046132261.1 MoeB/ThiF family adenylyltransferase -
  QYM22_RS08700 (QYM22_08700) glp 1660360..1661652 (+) 1293 WP_046132260.1 gephyrin-like molybdotransferase Glp -
  QYM22_RS08705 (QYM22_08705) mobB 1661619..1662155 (+) 537 WP_046132259.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22518.54 Da        Isoelectric Point: 10.0936

>NTDB_id=852480 QYM22_RS08680 WP_046132264.1 1656795..1657382(+) (rok) [Bacillus glycinifermentans strain SRCM12603]
MFNEREALRLRLEQLNEAEVKVIREYQIERDNIYAKLRELDRPSSFNNDTKKDFRTERKTESLPVLAELAAQEMKSYQQQ
QQMQTSQKTQQQTSPQASALPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGDISTETEKQ

Nucleotide


Download         Length: 588 bp        

>NTDB_id=852480 QYM22_RS08680 WP_046132264.1 1656795..1657382(+) (rok) [Bacillus glycinifermentans strain SRCM12603]
ATGTTTAACGAGAGGGAAGCATTGCGTTTACGATTGGAGCAGCTAAATGAAGCTGAGGTTAAGGTCATTAGGGAGTATCA
AATTGAGCGTGACAATATATATGCAAAGCTGCGTGAATTGGATCGCCCATCCAGCTTTAATAACGATACAAAAAAAGATT
TTCGCACAGAGCGAAAAACCGAATCGCTCCCTGTTTTAGCTGAATTAGCTGCACAGGAGATGAAAAGCTATCAACAGCAG
CAACAGATGCAGACATCTCAAAAAACTCAGCAGCAGACTTCTCCGCAAGCTTCCGCACTGCCTGCCGGAATTCCAGACGG
TACAACGCGGCGCAGAAGGGGGACGGCACGTCCGGGTTCAAAAGCTGCAAAACTGCGTGAAGCGGCGATTAAAACGTTGA
AGCGTCACAATGCGGCAATCAAAAGCTCCGAACTTCAAAAAGAAATTGAAAAAGAAAGCGGGCTTGAAATTCCGAATATG
ACAACCTTCATGCAAAGTCTCATTAAAATGTATCCGGAAGTCAAAAAACCATACCGCGGTCAATATATATTAGAGGGAGA
CATATCTACCGAAACAGAAAAACAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

83.158

97.436

0.81