Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   QYM22_RS08580 Genome accession   NZ_CP129342
Coordinates   1641592..1642053 (-) Length   153 a.a.
NCBI ID   WP_046132282.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain SRCM12603     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1640108..1641460 1641592..1642053 flank 132


Gene organization within MGE regions


Location: 1640108..1642053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM22_RS08575 (QYM22_08575) - 1640108..1641460 (+) 1353 WP_046131917.1 IS1182 family transposase -
  QYM22_RS08580 (QYM22_08580) kre 1641592..1642053 (-) 462 WP_046132282.1 YkyB family protein Regulator

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17601.46 Da        Isoelectric Point: 10.6215

>NTDB_id=852479 QYM22_RS08580 WP_046132282.1 1641592..1642053(-) (kre) [Bacillus glycinifermentans strain SRCM12603]
MDDHNHTKVLKPTVENLSKAIYTVNRHAKTATDPKYLYLLKKKALQKLINEGKGKKVGLHFSKNPKFSQQQSDVLISLGD
YFFHMPPTKEDFDNLPHLGTLNHSYRNPKAHMSLNIAKQLLQKYTGLKEKPLVTNRKRPSAKPVFKKLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=852479 QYM22_RS08580 WP_046132282.1 1641592..1642053(-) (kre) [Bacillus glycinifermentans strain SRCM12603]
ATGGACGACCATAATCATACTAAAGTATTAAAACCAACAGTTGAAAACCTTTCAAAAGCGATTTACACGGTCAATCGCCA
CGCAAAAACCGCGACCGATCCAAAATACCTGTATCTCCTGAAAAAGAAAGCTCTGCAAAAGCTCATCAATGAAGGAAAAG
GAAAAAAGGTAGGACTTCACTTTTCAAAAAACCCAAAGTTCAGCCAGCAGCAGTCAGATGTGCTTATTTCTCTCGGAGAC
TACTTTTTTCACATGCCTCCAACTAAAGAAGACTTCGATAACCTTCCGCACTTAGGTACACTAAATCATTCTTATCGGAA
CCCTAAAGCTCATATGTCATTGAACATCGCAAAGCAGCTTCTGCAGAAATACACGGGATTGAAGGAAAAGCCGCTTGTCA
CGAACAGGAAGCGCCCTTCGGCAAAGCCTGTATTCAAGAAGCTTGGCGAAAGCTATTTTTGA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

80.519

100

0.81