Detailed information    

insolico Bioinformatically predicted

Overview

Name   addA   Type   Machinery gene
Locus tag   QYM22_RS06480 Genome accession   NZ_CP129342
Coordinates   1262562..1266254 (+) Length   1230 a.a.
NCBI ID   WP_046131291.1    Uniprot ID   A0AAE2JVM9
Organism   Bacillus glycinifermentans strain SRCM12603     
Function   homologous recombination; plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1257562..1271254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM22_RS06470 (QYM22_06470) modB 1258310..1258966 (+) 657 WP_046131293.1 molybdate ABC transporter permease subunit -
  QYM22_RS06475 (QYM22_06475) addB 1259075..1262575 (+) 3501 WP_046131292.1 helicase-exonuclease AddAB subunit AddB Machinery gene
  QYM22_RS06480 (QYM22_06480) addA 1262562..1266254 (+) 3693 WP_046131291.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  QYM22_RS06485 (QYM22_06485) sbcD 1266322..1267506 (+) 1185 WP_046131290.1 exonuclease subunit SbcD -
  QYM22_RS06490 (QYM22_06490) sbcC 1267503..1270895 (+) 3393 WP_046131289.1 exonuclease subunit SbcC -
  QYM22_RS06495 (QYM22_06495) - 1270954..1271172 (-) 219 WP_046131288.1 spore germination protein -

Sequence

Protein


Download         Length: 1230 a.a.        Molecular weight: 141344.16 Da        Isoelectric Point: 5.4779

>NTDB_id=852469 QYM22_RS06480 WP_046131291.1 1262562..1266254(+) (addA) [Bacillus glycinifermentans strain SRCM12603]
METAKPKNSTWTDDQWKAIVSSGRDILVAAAAGSGKTAVLVERIIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIGEA
LEKKLAENPGSLHLRRQLSLLNRASISTLHSFCLQVVRKYYYMIDVDPAFRIADQTEGELLGDEVLDELFEEEYQKGDPA
FFELVDRYTTDRHDLDLQYLIKRVYEFSRSHPDPEAWLEKFMNLYDADPGAKIESLPFYSYIREDIALVLNSVREKLTRA
LELTKRPGGPAPRAENFLDDLAQIDKLLEHQDDFEALYELVPAVSFQRAKPCKGDDFDPSLIDEATDLRNSAKKMLEKLK
GDYFTRTPEQHLESLKEMKPVIRTLVQLVAEFGRRYRAAKKEKAIVDFSDLEHDCLAILTKKNEGGTTEPSEAAAYYRHL
FHEVLVDEYQDTNLVQEAILKLVAKEEHEGNLFMVGDVKQSIYRFRLAEPLLFLSKYKRFTDDGSGAGQKIDLNKNFRSR
SDILDSTNFLFKQLMGEKVGEVVYDEQAELKLGASYPPNESTKTEVLIIENGEDAADEEAEELETVQLEARAVAGRVREL
ISGKFQVYDGKTKTTRNIQYRDIVILLRSMPWAPQFMDEFKQQGIPVYANLSTGYFEATEVAVTLSLLKVIDNAYQDIPL
ASVLRSPIVGLDENELSLIRIRDKKAPFYEALKAYMASADRDDPLYEKLARFDGFLKKWRAYAKNHSVAELIWEVYRDTK
YIDYVGGMPGGKQRQANLRALYDRARSYESTSFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKGLEFP
VVFTAGLGRNFNMMDLNKSYLLDKELGFGTKFIHPKWRISYPTLPLVAMKKKMRRELLSEELRVLYVALTRAKEKLFLVG
TAKDKDKLLAKWRTSASHAEWLLPDFERFQAKSYLDFIGPALMRHRDMADGDLNLPNDDIRQHPSRFTISWISAGELQAE
DRAQTEEEKHERLSLVKKGLPIDGAFDYEKEVRERLTWSYPFRDASQVRTKQSVSEIKRQKEYEDEYGDRSLIRPANETL
LFRRPSFMMAKGLTAAERGTAMHTVMQHLPLTRVPEKDELGRLLDMLIEKELLTEEQRAAIEEDDILAFFDTDIGGKLLG
ARRVEREVPFNMTLPAREVYPGFKTADDPVLIQGIIDCLFETDDGFYLLDYKTDRIHGKFQNGFEGAEPILRKRYETQIN
LYARAVETMLKTPLRGKALYFFDGGHVILF

Nucleotide


Download         Length: 3693 bp        

>NTDB_id=852469 QYM22_RS06480 WP_046131291.1 1262562..1266254(+) (addA) [Bacillus glycinifermentans strain SRCM12603]
ATGGAAACGGCTAAGCCGAAAAACAGCACATGGACGGACGACCAATGGAAAGCGATCGTCTCATCCGGCCGGGATATTTT
GGTCGCCGCTGCGGCGGGCTCCGGAAAAACGGCCGTCCTTGTCGAGCGGATCATCCGAAAGATTACGGCAGAGGAAAATC
CGATCGATGTCGACCGGCTGCTCGTCGTCACCTTTACGAATGCATCGGCGGCGGAGATGAAACACCGGATCGGTGAAGCG
CTTGAGAAAAAGCTCGCCGAAAACCCCGGCTCCCTTCATTTGCGCAGGCAGCTTTCCTTGCTGAACAGGGCGAGCATTTC
GACATTGCATTCTTTTTGTCTTCAGGTCGTCCGCAAGTATTATTATATGATCGACGTTGATCCGGCTTTTCGGATCGCCG
ATCAGACAGAAGGCGAGCTGCTCGGCGATGAGGTCCTTGACGAGCTGTTTGAAGAAGAATATCAAAAAGGCGACCCGGCT
TTTTTTGAGCTGGTGGACAGATATACGACAGACCGCCACGATCTCGATTTGCAGTACCTTATCAAACGGGTTTACGAGTT
TTCCCGCTCACATCCCGACCCGGAAGCGTGGCTTGAAAAATTTATGAACCTGTACGACGCAGATCCCGGCGCGAAGATCG
AGTCGCTGCCGTTTTATTCCTACATCAGGGAAGATATCGCGCTTGTGTTGAACAGTGTGCGGGAAAAGCTGACCCGCGCG
CTTGAGCTGACAAAACGGCCGGGGGGGCCGGCTCCGCGCGCTGAAAACTTTCTCGACGATTTGGCGCAGATCGACAAGCT
GCTTGAGCATCAGGATGATTTTGAGGCCCTTTATGAGCTTGTGCCGGCTGTTTCGTTTCAGCGGGCCAAACCGTGCAAAG
GGGATGATTTCGATCCGTCTTTAATCGACGAAGCGACAGACCTTCGGAACAGTGCAAAAAAAATGCTTGAAAAGCTGAAA
GGCGACTATTTCACCCGAACGCCGGAGCAGCATTTGGAGAGTTTGAAGGAGATGAAGCCCGTCATCAGGACGCTTGTCCA
GCTCGTCGCAGAGTTCGGCAGACGCTATAGAGCGGCGAAGAAAGAAAAAGCCATCGTCGACTTCTCCGATCTTGAGCACG
ACTGCCTGGCGATTTTGACAAAGAAAAACGAAGGCGGGACAACGGAGCCGAGCGAAGCTGCGGCCTATTACCGGCACTTG
TTCCACGAAGTGCTCGTCGATGAGTATCAGGATACAAACCTTGTACAGGAGGCGATTTTAAAGCTTGTCGCCAAGGAGGA
GCACGAAGGAAACCTTTTTATGGTGGGCGATGTCAAGCAGTCGATCTACCGTTTCCGGCTGGCTGAGCCGCTTTTGTTTC
TTTCGAAATACAAGCGGTTCACAGATGACGGTTCAGGCGCCGGACAGAAAATCGATTTGAACAAAAACTTCAGAAGCCGG
TCCGACATTTTGGATAGCACCAATTTTTTGTTTAAACAGCTGATGGGGGAGAAGGTCGGCGAGGTTGTCTATGACGAACA
AGCCGAATTAAAGCTCGGCGCATCGTATCCTCCCAATGAGAGCACAAAAACAGAGGTGCTGATCATTGAAAATGGGGAAG
ATGCGGCTGATGAAGAGGCAGAAGAGCTTGAAACGGTTCAGCTTGAGGCAAGGGCTGTCGCCGGACGGGTCAGAGAGCTG
ATTTCCGGCAAATTTCAAGTGTATGACGGCAAAACGAAAACGACAAGAAACATCCAGTACCGCGACATCGTGATTTTGCT
GCGCTCCATGCCGTGGGCGCCGCAATTCATGGACGAGTTCAAGCAGCAGGGGATTCCGGTATACGCGAATCTGTCAACCG
GATATTTCGAAGCGACAGAAGTAGCCGTTACGCTTTCACTGCTTAAAGTCATCGACAATGCCTACCAGGATATTCCGCTT
GCATCCGTCCTCAGGTCACCGATTGTCGGCCTTGATGAAAACGAACTGTCCCTGATCAGAATCCGGGATAAAAAAGCGCC
GTTCTATGAAGCGCTGAAGGCGTATATGGCGTCAGCGGACAGGGATGATCCGCTTTATGAAAAGCTTGCCCGCTTTGACG
GGTTCCTGAAGAAGTGGAGGGCATACGCAAAAAACCATTCCGTGGCAGAGCTGATATGGGAAGTTTACCGCGATACGAAA
TATATCGATTATGTCGGCGGAATGCCGGGCGGAAAGCAGCGGCAAGCCAATTTGCGCGCGCTCTATGACAGGGCGAGATC
GTACGAATCGACCTCCTTCCGCGGATTGTTCCGCTTTTTGCGATTTATTGAACGGATGCAGGAGCGGGGCGATGACCTCG
GAACGGCGCGGGCTTTGAGCGAACAGGAAGACGTCGTCCGCCTGATGACGATCCATTCGAGCAAAGGCCTTGAATTTCCC
GTCGTATTCACGGCGGGCCTCGGCCGGAATTTCAATATGATGGATCTCAACAAATCGTATCTGCTTGATAAAGAGCTCGG
GTTCGGGACGAAATTTATCCATCCGAAATGGCGCATCAGCTATCCGACGCTGCCGCTTGTGGCGATGAAGAAAAAAATGC
GGCGCGAGCTTTTATCAGAAGAGCTCCGCGTCTTGTATGTCGCTCTCACCCGTGCAAAGGAAAAACTCTTTTTGGTCGGA
ACGGCGAAAGACAAGGACAAGCTTTTGGCAAAATGGCGGACCTCCGCCTCCCATGCCGAATGGCTGCTTCCTGATTTCGA
ACGCTTTCAGGCGAAATCGTATCTCGATTTTATCGGCCCAGCTTTAATGCGGCACAGGGATATGGCAGACGGTGATCTGA
ATTTGCCGAATGATGACATCCGTCAGCATCCGTCCCGTTTTACGATCAGCTGGATATCAGCAGGAGAGCTGCAGGCCGAA
GATAGAGCGCAGACTGAAGAAGAAAAACACGAACGGCTGTCACTGGTAAAAAAAGGGCTGCCGATCGATGGGGCTTTCGA
TTATGAAAAAGAAGTCCGCGAACGGCTGACATGGTCGTATCCTTTCCGGGATGCGTCACAGGTCCGCACAAAACAGTCTG
TCTCCGAAATCAAGAGACAGAAGGAGTACGAGGATGAGTACGGCGACCGTTCATTGATTCGTCCGGCAAATGAAACTTTG
CTGTTCAGAAGACCCTCTTTCATGATGGCAAAAGGGCTGACCGCCGCTGAGCGGGGAACGGCAATGCATACAGTCATGCA
GCATCTTCCGCTCACTCGCGTCCCCGAAAAGGATGAGCTCGGCCGTCTGCTGGACATGCTTATCGAAAAAGAGCTTCTAA
CGGAAGAGCAACGCGCAGCTATCGAAGAAGATGACATTCTCGCGTTTTTTGATACGGATATAGGCGGAAAACTGCTTGGC
GCCCGCCGGGTTGAGCGGGAAGTGCCCTTCAACATGACGCTGCCTGCACGAGAGGTTTATCCAGGCTTCAAGACTGCCGA
TGACCCCGTCTTAATTCAAGGGATTATCGACTGCTTGTTCGAAACCGATGACGGCTTTTATTTGCTTGACTACAAAACCG
ACCGGATACACGGCAAATTTCAAAACGGCTTTGAAGGAGCGGAGCCGATTTTACGAAAACGCTACGAGACGCAGATCAAC
CTTTACGCCCGGGCTGTCGAAACGATGCTTAAGACGCCTCTGAGAGGAAAGGCTCTTTACTTTTTCGACGGCGGGCACGT
GATCCTGTTTTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(471-880)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(11-460)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1051-1222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  addA Bacillus subtilis subsp. subtilis str. 168

73.74

100

0.737