Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QYM22_RS06350 Genome accession   NZ_CP129342
Coordinates   1236774..1237355 (+) Length   193 a.a.
NCBI ID   WP_046131313.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain SRCM12603     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1231774..1242355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM22_RS06330 (QYM22_06330) - 1232008..1233537 (-) 1530 WP_046128883.1 FAD-dependent oxidoreductase -
  QYM22_RS06335 (QYM22_06335) - 1233673..1234530 (+) 858 WP_046128882.1 SDR family oxidoreductase -
  QYM22_RS06340 (QYM22_06340) - 1234612..1236167 (+) 1556 WP_231947430.1 IS3 family transposase -
  QYM22_RS06345 (QYM22_06345) - 1236270..1236503 (-) 234 WP_046131314.1 IDEAL domain-containing protein -
  QYM22_RS06350 (QYM22_06350) comK 1236774..1237355 (+) 582 WP_046131313.1 competence protein ComK Regulator
  QYM22_RS06355 (QYM22_06355) - 1237349..1237714 (-) 366 WP_046131312.1 hypothetical protein -
  QYM22_RS06360 (QYM22_06360) - 1237946..1238557 (+) 612 WP_046131310.1 TVP38/TMEM64 family protein -
  QYM22_RS06365 (QYM22_06365) lepB 1238570..1239085 (+) 516 WP_046131309.1 signal peptidase I -
  QYM22_RS06370 (QYM22_06370) - 1239144..1241027 (-) 1884 WP_065894726.1 S8 family peptidase -
  QYM22_RS06375 (QYM22_06375) - 1241395..1241526 (+) 132 WP_269082044.1 hypothetical protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22549.59 Da        Isoelectric Point: 9.4685

>NTDB_id=852467 QYM22_RS06350 WP_046131313.1 1236774..1237355(+) (comK) [Bacillus glycinifermentans strain SRCM12603]
MSNTEDLTRDSYEVNSSTMAVLPLDDGKTPASKVLETDRTFRVNMRPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPP
IMVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFRAAKYDNTFVTFVNGESLELPVSRASFENQVYRTAWLRTKFLDRIEG
NAAPKKQEFMLYPKEDRNQLIYEFILRELRKRY

Nucleotide


Download         Length: 582 bp        

>NTDB_id=852467 QYM22_RS06350 WP_046131313.1 1236774..1237355(+) (comK) [Bacillus glycinifermentans strain SRCM12603]
ATGAGCAATACTGAAGATTTGACAAGAGATTCTTATGAAGTAAACAGTTCGACAATGGCAGTTCTGCCTCTTGATGATGG
AAAAACGCCCGCCTCAAAAGTGCTTGAAACCGACAGGACATTTCGGGTCAATATGAGACCTTTTCAAATCATAGAGAGAA
GCTGCCGCTATTTCGGTTCAAGCTATGCGGGGAGAAAGGCCGGCACGTACGAAGTCATTAAAGTTTCCCATAAGCCGCCG
ATCATGGTGGATCATTCAAACAATATTTTTCTTTTTCCCACATTCTCCTCTACAAGGCCTCAATGCGGGTGGCTTTCCCA
TGCGCATGTTCATGAATTCCGTGCGGCTAAGTATGACAATACATTCGTTACGTTCGTAAACGGTGAATCGCTGGAGCTGC
CGGTGTCCAGAGCATCTTTCGAAAATCAGGTTTACCGCACGGCATGGCTGAGAACGAAATTTCTCGACCGGATTGAAGGG
AACGCCGCGCCGAAAAAACAGGAATTTATGCTGTATCCGAAGGAGGATCGGAACCAGCTGATCTATGAATTCATCCTCAG
GGAGCTGAGAAAGCGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.684