Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   QYM22_RS04985 Genome accession   NZ_CP129342
Coordinates   986020..986811 (+) Length   263 a.a.
NCBI ID   WP_046130993.1    Uniprot ID   A0AAE2JVU6
Organism   Bacillus glycinifermentans strain SRCM12603     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 981020..991811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM22_RS04960 (QYM22_04960) - 983006..983893 (+) 888 WP_046130976.1 PhzF family phenazine biosynthesis isomerase -
  QYM22_RS04965 (QYM22_04965) - 983996..984580 (+) 585 WP_046130975.1 nitroreductase -
  QYM22_RS04970 (QYM22_04970) - 984619..984813 (-) 195 WP_046130974.1 YfhD family protein -
  QYM22_RS04975 (QYM22_04975) - 984885..984998 (-) 114 WP_082094105.1 YfhE family protein -
  QYM22_RS04980 (QYM22_04980) - 985063..985602 (-) 540 WP_046130973.1 GNAT family N-acetyltransferase -
  QYM22_RS04985 (QYM22_04985) recX 986020..986811 (+) 792 WP_046130993.1 recombination regulator RecX Regulator
  QYM22_RS04990 (QYM22_04990) - 986816..987130 (+) 315 WP_046130971.1 YfhH family protein -
  QYM22_RS04995 (QYM22_04995) - 987160..987330 (-) 171 WP_082094104.1 YpzG family protein -
  QYM22_RS05000 (QYM22_05000) - 987358..987507 (-) 150 WP_046130970.1 small, acid-soluble spore protein K -
  QYM22_RS05005 (QYM22_05005) - 987701..987919 (+) 219 WP_046130992.1 YfhJ family protein -
  QYM22_RS05010 (QYM22_05010) - 987958..989070 (+) 1113 WP_046130969.1 FAD-dependent oxidoreductase -
  QYM22_RS05015 (QYM22_05015) - 989262..990221 (+) 960 WP_046130968.1 glycosyltransferase family 2 protein -
  QYM22_RS05020 (QYM22_05020) - 990190..990591 (+) 402 WP_082094103.1 GtrA family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30503.87 Da        Isoelectric Point: 7.9823

>NTDB_id=852463 QYM22_RS04985 WP_046130993.1 986020..986811(+) (recX) [Bacillus glycinifermentans strain SRCM12603]
MPYITKISAQKNNKDRVNIFLDEKYAFSVDMDVLVKFNLKKGKQLDELDVIEIQYGDDIKKGFNQALDYLSYRMRSIKEV
KDHLKKKGVADSAVTEIIHMLKSYKYVDDREFAAAYVSTHRKTSGKGPDVLYKELQLKGIDEELIKEALSSFTFSEQVTA
AVKHAEKVLKKGKKLSSKEMKQAIEQQLIRKGYSFDVINCALSETDYENDDDAEKEALYKHGEKAMRRYNYDGSYETKMK
VKQFLFRKGFPLDMIDQYLDEEG

Nucleotide


Download         Length: 792 bp        

>NTDB_id=852463 QYM22_RS04985 WP_046130993.1 986020..986811(+) (recX) [Bacillus glycinifermentans strain SRCM12603]
ATGCCGTATATTACAAAAATCTCCGCCCAGAAAAACAATAAAGACCGCGTCAATATTTTTCTGGACGAAAAATACGCGTT
CAGCGTTGACATGGATGTTCTCGTTAAGTTTAATCTGAAAAAGGGAAAACAGCTTGATGAGCTTGACGTCATCGAAATCC
AGTATGGCGATGATATTAAAAAAGGTTTTAATCAAGCGCTCGATTACCTTTCGTACAGAATGCGCTCAATAAAAGAAGTC
AAAGACCATTTAAAGAAAAAAGGCGTCGCAGATTCCGCAGTGACCGAGATCATTCATATGCTCAAAAGCTATAAATACGT
AGATGACCGGGAATTCGCGGCCGCTTATGTAAGCACTCACCGCAAAACGAGCGGCAAAGGCCCTGATGTTCTATATAAAG
AGCTGCAATTAAAAGGAATCGATGAAGAGCTGATCAAGGAGGCATTAAGCTCATTTACGTTTTCCGAACAAGTGACAGCC
GCTGTAAAACACGCTGAAAAAGTGCTGAAAAAGGGGAAAAAACTGTCTTCCAAAGAGATGAAACAAGCAATCGAACAGCA
GCTAATCCGAAAGGGATATTCATTCGATGTGATCAATTGCGCTCTTTCAGAAACAGACTATGAAAACGATGATGATGCGG
AAAAAGAAGCGCTGTACAAGCATGGGGAAAAAGCAATGAGACGCTACAATTACGACGGCTCGTACGAAACGAAAATGAAA
GTAAAACAATTTTTGTTTCGCAAAGGATTTCCGCTTGATATGATCGATCAATATTTAGACGAAGAGGGATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

69.084

99.62

0.688