Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QYM22_RS00275 Genome accession   NZ_CP129342
Coordinates   49986..50279 (-) Length   97 a.a.
NCBI ID   WP_087962552.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain SRCM12603     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 44986..55279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM22_RS00245 (QYM22_00245) - 45109..45936 (+) 828 WP_046131740.1 stage 0 sporulation family protein -
  QYM22_RS00250 (QYM22_00250) yabA 45951..46313 (+) 363 WP_046131739.1 DNA replication initiation control protein YabA -
  QYM22_RS00255 (QYM22_00255) - 46396..47139 (+) 744 WP_046131738.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QYM22_RS00260 (QYM22_00260) - 47126..47419 (+) 294 WP_046131737.1 GIY-YIG nuclease family protein -
  QYM22_RS00265 (QYM22_00265) rsmI 47394..48269 (+) 876 WP_046131748.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QYM22_RS00270 (QYM22_00270) - 48352..49907 (+) 1556 WP_231947405.1 IS3 family transposase -
  QYM22_RS00275 (QYM22_00275) abrB 49986..50279 (-) 294 WP_087962552.1 transition state genes transcriptional regulator AbrB Regulator
  QYM22_RS00280 (QYM22_00280) metG 50786..52774 (+) 1989 WP_046131736.1 methionine--tRNA ligase -
  QYM22_RS00285 (QYM22_00285) - 52863..53630 (+) 768 WP_046131735.1 TatD family hydrolase -
  QYM22_RS00290 (QYM22_00290) - 53874..55073 (+) 1200 WP_046131734.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10779.57 Da        Isoelectric Point: 5.1848

>NTDB_id=852458 QYM22_RS00275 WP_087962552.1 49986..50279(-) (abrB) [Bacillus glycinifermentans strain SRCM12603]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSLKN

Nucleotide


Download         Length: 294 bp        

>NTDB_id=852458 QYM22_RS00275 WP_087962552.1 49986..50279(-) (abrB) [Bacillus glycinifermentans strain SRCM12603]
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGACGAACTAGGACGCGTGGTGATTCCGATTGAACTTCGCCGTAC
GCTTGGAATCGCAGAAAAAGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGCGAAGTTTCTGATGACAACCTTAAACTTGCCGGCGGTAAACTGGTTCTTAGCCCAGAAGGC
GCTGAGCAAATCATCAATGAAATTCAAGCACAGCTTCAATCTCTAAAAAATTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

94.792

98.969

0.938