Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   QYM22_RS00020 Genome accession   NZ_CP129342
Coordinates   2323..3435 (+) Length   370 a.a.
NCBI ID   WP_046129446.1    Uniprot ID   A0AAE2ER04
Organism   Bacillus glycinifermentans strain SRCM12603     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..8435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM22_RS00010 (QYM22_00010) dnaN 796..1932 (+) 1137 WP_046129444.1 DNA polymerase III subunit beta -
  QYM22_RS00015 (QYM22_00015) yaaA 2092..2307 (+) 216 WP_046129445.1 S4 domain-containing protein YaaA -
  QYM22_RS00020 (QYM22_00020) recF 2323..3435 (+) 1113 WP_046129446.1 DNA replication/repair protein RecF Machinery gene
  QYM22_RS00025 (QYM22_00025) remB 3453..3695 (+) 243 WP_046129447.1 extracellular matrix regulator RemB -
  QYM22_RS00030 (QYM22_00030) gyrB 3743..5671 (+) 1929 WP_046129448.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  QYM22_RS00035 (QYM22_00035) gyrA 5847..8306 (+) 2460 WP_046129449.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42368.23 Da        Isoelectric Point: 6.9441

>NTDB_id=852456 QYM22_RS00020 WP_046129446.1 2323..3435(+) (recF) [Bacillus glycinifermentans strain SRCM12603]
MYIQNLTLSSYRNYERVELEFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSHYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQESFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHQTLNEAGIFRVANGALLD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=852456 QYM22_RS00020 WP_046129446.1 2323..3435(+) (recF) [Bacillus glycinifermentans strain SRCM12603]
TTGTATATCCAAAATCTTACATTATCATCTTACCGCAACTATGAGCGCGTTGAGCTCGAATTTGAAAACAAAGTGAACGT
GATTATCGGAGAGAACGCACAAGGCAAGACAAATTTGATGGAAGCGATCTACGTGCTTGCGATGGCAAAATCTCACCGGA
CCTCTAATGACAAAGAACTCATACGGTGGGATCAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTCCT
GTTCCAATCCAGCTCGTCATTTCCAAAAAAGGCAAAAAAGGAAAGGTCAATCATATTGAACAGCAGAAACTGAGCCAATA
TGTAGGCGCCGTTAACACGATCATGTTTGCTCCTGAAGATTTGAATCTTGTAAAAGGTAGCCCGCAGGTCAGGAGAAGAT
TTCTTGACATGGAAATCGGCCAAGTGTCACCCGTCTATCTTCATGACCTTTCTCATTACCAAAAAATCCTTTCACAGCGC
AACCATTTCTTGAAGCAGCTACAAACGAGAAAACAGACAGATCAGACGATGCTTGACGTGCTGACGGAACAGCTTACGGA
ATTCGCGGCAAAGGTTGTGATGAAGCGGCTTCAATTTGTTGATCAGCTCGAAAAATGGGCTCAGCCCATCCATTCCGGAA
TTTCGCGAGGTCTGGAAGAACTGACGTTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCTGATTTGTCGAAAATG
ATCAATAGTTACCAAGAATCGTTTTCTAAATTAAGAGATAAAGAAATTGAACGGGGCGTTTCTTTGTCCGGCCCCCACAG
AGACGATGTTCTGTTCTACGTCAACGGCCGGGATGTCCAAACCTACGGTTCACAAGGGCAGCAGCGGACGACTGCATTAT
CTCTTAAATTGGCGGAAATTGATTTGATTCAGGAAGAAATTGGGGAATATCCGATTTTGCTTTTGGATGATGTATTATCA
GAGCTTGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGGCGTGTTCAAACTTTCGTGACAACGACAAGCGT
CGACGGGATTGATCATCAAACCTTAAACGAAGCAGGAATCTTTCGTGTTGCAAATGGCGCGCTATTGGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

89.16

99.73

0.889