Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QYH55_RS08225 Genome accession   NZ_CP129341
Coordinates   1723019..1724392 (-) Length   457 a.a.
NCBI ID   WP_046921742.1    Uniprot ID   -
Organism   Ligilactobacillus ruminis strain SRCM218231     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1718019..1729392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH55_RS08205 (QYH55_08205) - 1718538..1719719 (-) 1182 WP_301558147.1 RNA-guided endonuclease TnpB family protein -
  QYH55_RS08210 (QYH55_08210) tnpA 1719716..1720153 (-) 438 Protein_1580 IS200/IS605 family transposase -
  QYH55_RS08215 (QYH55_08215) gltX 1720294..1721784 (-) 1491 WP_003693274.1 glutamate--tRNA ligase -
  QYH55_RS08220 (QYH55_08220) - 1721888..1722997 (-) 1110 WP_273744581.1 PIN/TRAM domain-containing protein -
  QYH55_RS08225 (QYH55_08225) radA 1723019..1724392 (-) 1374 WP_046921742.1 DNA repair protein RadA Machinery gene
  QYH55_RS08230 (QYH55_08230) - 1724470..1725006 (-) 537 WP_003693267.1 dUTP diphosphatase -
  QYH55_RS08235 (QYH55_08235) tnpA 1725294..1725491 (+) 198 Protein_1585 IS200/IS605 family transposase -
  QYH55_RS08240 (QYH55_08240) - 1725561..1725740 (+) 180 Protein_1586 zinc ribbon domain-containing protein -
  QYH55_RS08245 (QYH55_08245) - 1725952..1726233 (+) 282 WP_039122998.1 GNAT family N-acetyltransferase -
  QYH55_RS08250 (QYH55_08250) rpiA 1726249..1726932 (+) 684 WP_039123001.1 ribose-5-phosphate isomerase RpiA -
  QYH55_RS08255 (QYH55_08255) - 1727014..1728351 (+) 1338 WP_273744580.1 C1 family peptidase -
  QYH55_RS08260 (QYH55_08260) - 1728414..1729085 (-) 672 WP_046921761.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49659.00 Da        Isoelectric Point: 6.5137

>NTDB_id=852447 QYH55_RS08225 WP_046921742.1 1723019..1724392(-) (radA) [Ligilactobacillus ruminis strain SRCM218231]
MAKAKTRFVCQTCGYVSPRYLGRCPNCGEWNTLVEEIEESKNVQTAPRVTFSGAKVKPQLIDAISTRETPRIVTKNAELN
RVLGGGIVPSSMVLIGGDPGIGKSTMLLQLSGELADMGGKVLYVSGEESANQIKMRADRLGVGGSEFYLYPETDMQSILQ
NVEDLKPDYVVIDSVQTMQDPELTSAVGSVAQIRSVTASLMQVAKVNGITVFIVGHVTKGGAIAGPKILEHMVDTVLYFE
GDMHRTYRILRAVKNRFGSTNEIGVFEMREDGLNEVKNPSEIFLEERLKGATGSSVVVSMEGTRPILAEVQALVTPTAFG
NAKRTTNGLDHNRVSLIMAVLEKRSGLLLQNQDAYLKAAGGVKLDEPAIDLAVAVSIVSSYRDEETLATDCFIGELGLTG
EVRRVGRIDARVKEAAKLGFKRAFVPKNNLDGWEFPSNIQVVGVQTLNETLKQVFRS

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=852447 QYH55_RS08225 WP_046921742.1 1723019..1724392(-) (radA) [Ligilactobacillus ruminis strain SRCM218231]
GTGGCAAAAGCAAAAACCAGATTCGTCTGCCAGACATGCGGGTACGTTTCGCCGCGCTACCTTGGACGATGCCCGAATTG
CGGTGAGTGGAACACTTTGGTTGAAGAAATCGAAGAATCAAAAAACGTTCAGACTGCTCCGCGAGTGACTTTTTCAGGCG
CGAAGGTCAAACCGCAGCTGATTGATGCGATTTCGACCAGAGAAACGCCGCGAATCGTCACGAAAAATGCCGAGCTCAAT
CGTGTTCTCGGTGGCGGAATCGTTCCAAGCTCAATGGTTCTGATCGGGGGCGATCCCGGAATCGGAAAGTCGACGATGCT
GCTGCAGCTTTCCGGAGAATTGGCCGATATGGGCGGTAAAGTGCTTTATGTTTCAGGCGAAGAAAGCGCCAATCAGATCA
AAATGAGGGCAGATCGCCTTGGAGTCGGCGGCAGCGAATTTTATCTCTATCCTGAAACCGATATGCAAAGCATTTTGCAA
AATGTCGAAGATTTAAAGCCGGATTATGTCGTAATCGACTCCGTTCAAACGATGCAGGATCCGGAATTGACTTCTGCCGT
CGGGAGCGTGGCCCAGATTCGTTCCGTGACGGCTTCATTGATGCAGGTCGCAAAGGTCAACGGCATTACTGTTTTCATTG
TCGGACACGTGACGAAAGGCGGCGCAATTGCCGGTCCGAAGATTTTAGAGCACATGGTTGATACGGTGCTTTATTTTGAA
GGCGACATGCACAGAACCTACAGGATTTTGCGCGCCGTCAAGAATCGTTTCGGTTCAACGAATGAAATCGGCGTTTTTGA
AATGAGAGAAGACGGTTTGAATGAAGTCAAAAATCCTTCTGAAATTTTTTTGGAAGAAAGATTGAAGGGTGCGACCGGCT
CTTCCGTTGTCGTTTCAATGGAGGGAACGCGCCCGATTTTAGCTGAAGTGCAGGCTTTGGTGACACCGACTGCATTTGGC
AATGCCAAAAGGACGACCAACGGCCTGGATCATAATCGTGTTTCGTTGATCATGGCGGTTTTGGAAAAGCGCTCCGGGCT
GCTTTTGCAAAATCAGGATGCCTATCTTAAGGCTGCTGGCGGCGTCAAGCTTGACGAACCGGCAATCGATTTGGCGGTTG
CGGTGAGCATCGTTTCAAGTTATCGCGACGAAGAAACGCTTGCGACGGATTGTTTCATCGGCGAATTGGGCCTGACGGGC
GAGGTGAGACGCGTCGGAAGAATCGATGCACGCGTCAAGGAGGCAGCCAAGCTCGGCTTTAAGCGTGCGTTTGTTCCTAA
GAACAATTTGGATGGTTGGGAGTTTCCGTCCAATATTCAAGTAGTCGGGGTTCAGACCCTGAATGAAACTCTCAAACAAG
TATTTAGAAGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

67.177

100

0.672
  radA Streptococcus pneumoniae D39

67.177

100

0.672
  radA Streptococcus pneumoniae R6

67.177

100

0.672
  radA Streptococcus pneumoniae TIGR4

67.177

100

0.672
  radA Streptococcus mitis NCTC 12261

67.177

100

0.672
  radA Streptococcus mitis SK321

67.177

100

0.672
  radA Bacillus subtilis subsp. subtilis str. 168

62.009

100

0.621