Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QYH55_RS06260 Genome accession   NZ_CP129341
Coordinates   1296861..1298666 (-) Length   601 a.a.
NCBI ID   WP_301557997.1    Uniprot ID   -
Organism   Ligilactobacillus ruminis strain SRCM218231     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1291861..1303666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH55_RS06235 (QYH55_06235) mgtE 1292083..1293453 (-) 1371 WP_039121079.1 magnesium transporter -
  QYH55_RS06240 (QYH55_06240) - 1293459..1294364 (-) 906 WP_046921139.1 RluA family pseudouridine synthase -
  QYH55_RS06245 (QYH55_06245) - 1294354..1295160 (-) 807 WP_080926530.1 NAD kinase -
  QYH55_RS06250 (QYH55_06250) - 1295157..1295846 (-) 690 WP_046921140.1 GTP pyrophosphokinase family protein -
  QYH55_RS06255 (QYH55_06255) - 1296173..1296820 (+) 648 WP_080926528.1 ClpXP adapter SpxH family protein -
  QYH55_RS06260 (QYH55_06260) pepF 1296861..1298666 (-) 1806 WP_301557997.1 oligoendopeptidase F Regulator
  QYH55_RS06265 (QYH55_06265) - 1298755..1299675 (-) 921 WP_301557998.1 competence protein CoiA family protein -
  QYH55_RS06270 (QYH55_06270) - 1299826..1300602 (-) 777 WP_301557999.1 adaptor protein MecA -
  QYH55_RS06275 (QYH55_06275) spxA 1300715..1301113 (-) 399 WP_046921144.1 transcriptional regulator SpxA -
  QYH55_RS06280 (QYH55_06280) - 1301427..1301987 (+) 561 WP_003693554.1 M15 family metallopeptidase -
  QYH55_RS06285 (QYH55_06285) nrdG 1302343..1303029 (-) 687 WP_301558000.1 anaerobic ribonucleoside-triphosphate reductase activating protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69505.74 Da        Isoelectric Point: 4.7265

>NTDB_id=852442 QYH55_RS06260 WP_301557997.1 1296861..1298666(-) (pepF) [Ligilactobacillus ruminis strain SRCM218231]
MAEVKQLPKREEVPVELTWDLTKIYATDTDFEADFAKVKKEAESFKKYQGKLKENGDTLLEAIKEMFAIQRRLENVYVYA
SMKNDQDTANAENQAKNATVQKLVAEVSEKLSWFQPELLHLTIEELEEAKKQAPELNEYSQNLREWFEMKDHVLSDKEEA
LLAGASDIFSAPESTFEVLNDADLKFPVMKDENGDDVELSEGIYGTLLESTDRRVRKEAFQNLYKVYRQFRHTFAMTLSS
HNRTENYVAKVRNYSTAQEAALANNHIPVSVYDTLINVTNRHLPLLHRYVALRKKLLNLDEVHMYDLYTPITGEPTLKYT
YDEAKEEALKALAVLGDDYLSHVKEAFDNRWIDVVANQGKRGGAYSGGSYDTAPYILLNWQDTLDNLFTLVHEMGHTIHS
YYTRHNQPYQYGDYSIFVAEIASTTNENLLTQYLLDHFEDKKVKAYVLNHYLDGFKGTVFRQTQFAEFEKWSHEQDAAGN
PLTADVISKYYGELNKRYYGPDIFNDDEISLEWARIPHFYYNYYVYQYATGFAAATTLAQNILNDNPADTQAYLTYLKSG
SSEYPIDIMKKAGVDMTNEEYLEKAFDVFEKRLNELEKLIG

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=852442 QYH55_RS06260 WP_301557997.1 1296861..1298666(-) (pepF) [Ligilactobacillus ruminis strain SRCM218231]
ATGGCTGAAGTAAAACAACTTCCAAAACGTGAAGAAGTTCCGGTTGAACTGACATGGGATCTCACGAAAATTTATGCTAC
GGATACGGACTTCGAAGCAGATTTTGCCAAAGTAAAAAAAGAAGCGGAGAGTTTCAAAAAATATCAGGGCAAGCTGAAGG
AAAACGGAGATACCTTGCTCGAAGCAATTAAAGAAATGTTTGCGATTCAAAGGCGTCTTGAGAATGTTTATGTTTATGCA
AGCATGAAGAATGATCAAGATACTGCCAATGCTGAAAATCAAGCCAAGAACGCAACCGTTCAAAAACTTGTGGCCGAAGT
TTCGGAAAAACTTTCCTGGTTTCAACCGGAGCTCTTGCATTTGACGATTGAAGAGCTTGAGGAGGCAAAGAAGCAGGCAC
CGGAACTTAACGAATATTCACAAAATCTCAGAGAATGGTTTGAGATGAAAGATCACGTCTTAAGTGACAAAGAAGAAGCA
TTGCTTGCCGGTGCGAGCGACATCTTCAGTGCACCTGAAAGCACTTTTGAAGTTTTGAACGATGCTGATTTGAAATTCCC
TGTCATGAAGGACGAAAACGGTGATGACGTTGAGCTTTCAGAAGGAATCTACGGAACGTTGCTCGAATCGACGGATCGTC
GCGTTCGCAAAGAAGCTTTCCAAAATTTGTATAAGGTTTATCGCCAGTTTCGTCATACGTTTGCTATGACGCTGTCTTCA
CACAACAGGACCGAAAATTACGTTGCCAAAGTCAGAAATTACTCAACTGCACAAGAGGCAGCTTTGGCAAACAATCACAT
CCCGGTCTCTGTTTATGATACGCTTATCAATGTAACGAATAGGCATTTGCCTTTGCTGCATCGCTACGTTGCGCTCAGGA
AGAAATTGCTCAATCTTGACGAGGTGCATATGTATGATCTGTATACGCCGATCACGGGAGAGCCGACCCTCAAATATACG
TATGATGAAGCCAAGGAAGAAGCATTAAAAGCATTGGCTGTTTTAGGTGACGATTATCTTTCTCACGTTAAAGAAGCTTT
TGACAATCGTTGGATTGATGTTGTGGCAAATCAGGGCAAGCGCGGCGGAGCGTACTCTGGCGGATCTTACGATACTGCCC
CGTACATTTTGCTCAATTGGCAGGATACGCTTGATAATTTGTTTACGCTTGTACATGAAATGGGACATACGATTCACAGC
TACTATACTCGTCATAATCAACCTTATCAATACGGGGATTATTCAATTTTTGTTGCTGAAATTGCTTCAACGACAAACGA
AAACTTATTGACGCAATATTTGCTTGATCATTTTGAAGACAAAAAAGTTAAAGCATATGTTTTAAATCACTATCTCGATG
GTTTCAAGGGAACGGTTTTCCGTCAGACGCAATTTGCTGAATTTGAAAAATGGTCCCATGAACAAGACGCTGCAGGCAAT
CCGCTGACTGCCGATGTTATCAGCAAGTACTATGGCGAGCTAAATAAGCGTTACTACGGGCCTGATATTTTTAATGACGA
TGAAATTTCGCTTGAATGGGCACGAATTCCTCATTTTTACTACAACTATTACGTCTATCAATATGCAACGGGATTTGCTG
CTGCAACGACTTTGGCACAAAATATCCTAAATGATAATCCTGCCGATACGCAAGCATATCTGACATATTTGAAGTCAGGA
TCGAGCGAATATCCAATTGACATCATGAAAAAAGCTGGCGTTGATATGACGAATGAAGAGTATCTTGAAAAAGCATTTGA
TGTCTTTGAAAAACGACTAAATGAATTGGAGAAACTCATTGGTTGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.807

98.336

0.529