Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V6S29_RS04910 Genome accession   NZ_CP145698
Coordinates   788786..789415 (-) Length   209 a.a.
NCBI ID   WP_032296620.1    Uniprot ID   -
Organism   Escherichia coli strain S1-KEN-03-A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 783786..794415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S29_RS04895 (V6S29_04895) helD 784028..786082 (-) 2055 WP_000420536.1 DNA helicase IV -
  V6S29_RS04900 (V6S29_04900) yccF 786205..786651 (+) 447 WP_001261235.1 YccF domain-containing protein -
  V6S29_RS04905 (V6S29_04905) yccS 786661..788823 (+) 2163 WP_072170306.1 YccS family putative transporter -
  V6S29_RS04910 (V6S29_04910) sxy/tfoX 788786..789415 (-) 630 WP_032296620.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  V6S29_RS04915 (V6S29_04915) sulA 789634..790143 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  V6S29_RS04920 (V6S29_04920) ompA 790500..791540 (+) 1041 WP_000750416.1 porin OmpA -
  V6S29_RS04925 (V6S29_04925) matP 791616..792068 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  V6S29_RS04930 (V6S29_04930) ycbZ 792254..794014 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24127.97 Da        Isoelectric Point: 8.9891

>NTDB_id=852411 V6S29_RS04910 WP_032296620.1 788786..789415(-) (sxy/tfoX) [Escherichia coli strain S1-KEN-03-A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVAHRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=852411 V6S29_RS04910 WP_032296620.1 788786..789415(-) (sxy/tfoX) [Escherichia coli strain S1-KEN-03-A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACA
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995