Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   QYC34_RS16340 Genome accession   NZ_CP129338
Coordinates   2976990..2977736 (-) Length   248 a.a.
NCBI ID   WP_082090408.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM126725     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2971990..2982736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC34_RS16310 (QYC34_16310) - 2972318..2972752 (+) 435 WP_041345303.1 helix-turn-helix domain-containing protein -
  QYC34_RS16315 (QYC34_16315) - 2972766..2973212 (+) 447 WP_041345305.1 ImmA/IrrE family metallo-endopeptidase -
  QYC34_RS16320 (QYC34_16320) - 2973261..2974679 (+) 1419 WP_042975137.1 recombinase family protein -
  QYC34_RS16325 (QYC34_16325) radC 2974678..2975099 (-) 422 Protein_3166 DNA repair protein RadC -
  QYC34_RS16330 (QYC34_16330) maf 2975136..2975705 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  QYC34_RS16335 (QYC34_16335) spoIIB 2975858..2976856 (-) 999 WP_029318188.1 stage II sporulation protein SpoIIB -
  QYC34_RS16340 (QYC34_16340) comC 2976990..2977736 (-) 747 WP_082090408.1 A24 family peptidase Machinery gene
  QYC34_RS16345 (QYC34_16345) folC 2977876..2979168 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  QYC34_RS16350 (QYC34_16350) valS 2979228..2981870 (-) 2643 WP_046160705.1 valine--tRNA ligase -
  QYC34_RS16355 (QYC34_16355) - 2982318..2982509 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26451.08 Da        Isoelectric Point: 9.7944

>NTDB_id=852358 QYC34_RS16340 WP_082090408.1 2976990..2977736(-) (comC) [Bacillus subtilis strain SRCM126725]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCLFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGISLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=852358 QYC34_RS16340 WP_082090408.1 2976990..2977736(-) (comC) [Bacillus subtilis strain SRCM126725]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCTGTTTTGCCGGCGAACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCATATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTTTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996