Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   QYC34_RS13725 Genome accession   NZ_CP129338
Coordinates   2553307..2554110 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM126725     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2548307..2559110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC34_RS13700 (QYC34_13700) glpQB 2549453..2550184 (-) 732 WP_046160572.1 glycerophosphodiester phosphodiesterase -
  QYC34_RS13705 (QYC34_13705) yqiI 2550263..2550883 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  QYC34_RS13710 (QYC34_13710) - 2550903..2551199 (-) 297 WP_014480225.1 hypothetical protein -
  QYC34_RS13715 (QYC34_13715) - 2551507..2551659 (+) 153 WP_122060483.1 hypothetical protein -
  QYC34_RS13720 (QYC34_13720) yqiG 2551732..2552850 (+) 1119 WP_046160573.1 NADH-dependent flavin oxidoreductase -
  QYC34_RS13725 (QYC34_13725) spo0A 2553307..2554110 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  QYC34_RS13730 (QYC34_13730) spoIVB 2554386..2555666 (-) 1281 WP_046160574.1 SpoIVB peptidase -
  QYC34_RS13735 (QYC34_13735) recN 2555841..2557571 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  QYC34_RS13740 (QYC34_13740) argR 2557608..2558057 (-) 450 WP_003230265.1 arginine repressor ArgR -
  QYC34_RS13745 (QYC34_13745) yqxC 2558155..2559000 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=852339 QYC34_RS13725 WP_003226427.1 2553307..2554110(-) (spo0A) [Bacillus subtilis strain SRCM126725]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=852339 QYC34_RS13725 WP_003226427.1 2553307..2554110(-) (spo0A) [Bacillus subtilis strain SRCM126725]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTTGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1