Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QYC34_RS12720 Genome accession   NZ_CP129338
Coordinates   2373977..2374597 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM126725     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2368977..2379597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC34_RS12680 (QYC34_12680) ptsA 2370108..2370614 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  QYC34_RS12685 (QYC34_12685) ypqA 2370752..2371171 (+) 420 WP_042976351.1 Hsp20/alpha crystallin family protein -
  QYC34_RS12690 (QYC34_12690) sppG 2371192..2371569 (-) 378 WP_004398696.1 YppG family protein -
  QYC34_RS12695 (QYC34_12695) yppF 2371757..2371945 (+) 189 WP_003230690.1 YppF family protein -
  QYC34_RS12700 (QYC34_12700) yppE 2371984..2372355 (-) 372 WP_003246080.1 YppE family protein -
  QYC34_RS12705 (QYC34_12705) yppD 2372401..2372646 (-) 246 WP_004398488.1 YppD family protein -
  QYC34_RS12710 (QYC34_12710) sspM 2372845..2372949 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  QYC34_RS12715 (QYC34_12715) yppC 2372974..2373936 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  QYC34_RS12720 (QYC34_12720) recU 2373977..2374597 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  QYC34_RS12725 (QYC34_12725) ponA 2374619..2377363 (+) 2745 WP_046160510.1 transglycosylase domain-containing protein -
  QYC34_RS12730 (QYC34_12730) ypoC 2377439..2377933 (-) 495 WP_009967579.1 YpoC family protein -
  QYC34_RS12735 (QYC34_12735) nth 2377930..2378589 (-) 660 WP_009967580.1 endonuclease III -
  QYC34_RS12740 (QYC34_12740) dnaD 2378608..2379306 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=852338 QYC34_RS12720 WP_004399067.1 2373977..2374597(+) (recU) [Bacillus subtilis strain SRCM126725]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=852338 QYC34_RS12720 WP_004399067.1 2373977..2374597(+) (recU) [Bacillus subtilis strain SRCM126725]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1