Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   QYC34_RS09275 Genome accession   NZ_CP129338
Coordinates   1741964..1742539 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM126725     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1736964..1747539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC34_RS09245 (QYC34_09245) dapD 1737152..1737862 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  QYC34_RS09250 (QYC34_09250) dapI 1737932..1739056 (+) 1125 WP_043857415.1 N-acetyldiaminopimelate deacetylase -
  QYC34_RS09255 (QYC34_09255) ykuS 1739118..1739363 (+) 246 WP_003232382.1 YkuS family protein -
  QYC34_RS09260 (QYC34_09260) mscT 1739400..1740203 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  QYC34_RS09265 (QYC34_09265) ahpA 1740440..1740982 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  QYC34_RS09270 (QYC34_09270) ykuV 1741052..1741498 (+) 447 WP_015252187.1 thiol-disulfide oxidoreductase YkuV -
  QYC34_RS09275 (QYC34_09275) rok 1741964..1742539 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  QYC34_RS09280 (QYC34_09280) cse15 1742580..1743545 (-) 966 WP_046160341.1 spore protein Cse15 -
  QYC34_RS09285 (QYC34_09285) mobA 1743682..1744281 (+) 600 WP_046160342.1 molybdenum cofactor guanylyltransferase -
  QYC34_RS09290 (QYC34_09290) moeB 1744332..1745351 (+) 1020 WP_046160343.1 molybdopterin-synthase adenylyltransferase MoeB -
  QYC34_RS09295 (QYC34_09295) glp 1745369..1746661 (+) 1293 WP_046160344.1 gephyrin-like molybdotransferase Glp -
  QYC34_RS09300 (QYC34_09300) mobB 1746622..1747143 (+) 522 WP_046160345.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=852332 QYC34_RS09275 WP_003232378.1 1741964..1742539(+) (rok) [Bacillus subtilis strain SRCM126725]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=852332 QYC34_RS09275 WP_003232378.1 1741964..1742539(+) (rok) [Bacillus subtilis strain SRCM126725]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1