Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QYC34_RS07040 Genome accession   NZ_CP129338
Coordinates   1344244..1344822 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM126725     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1339244..1349822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC34_RS07020 (QYC34_07020) hemAT 1339755..1341053 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  QYC34_RS07025 (QYC34_07025) comW 1341192..1342721 (-) 1530 WP_046160242.1 FAD-dependent oxidoreductase -
  QYC34_RS07030 (QYC34_07030) yhxC 1342833..1343690 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  QYC34_RS07035 (QYC34_07035) yhzC 1343718..1343951 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  QYC34_RS07040 (QYC34_07040) comK 1344244..1344822 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  QYC34_RS07045 (QYC34_07045) yhxD 1344869..1345768 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  QYC34_RS07050 (QYC34_07050) yhjA 1345985..1346254 (+) 270 WP_029726293.1 excalibur calcium-binding domain-containing protein -
  QYC34_RS07055 (QYC34_07055) yhjB 1346298..1347767 (-) 1470 WP_046160243.1 sodium:solute symporter -
  QYC34_RS07060 (QYC34_07060) yhjC 1347764..1347964 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  QYC34_RS07065 (QYC34_07065) - 1348163..1348534 (-) 372 WP_046160244.1 hypothetical protein -
  QYC34_RS07070 (QYC34_07070) yhjE 1348686..1349309 (+) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  QYC34_RS07075 (QYC34_07075) lepB 1349311..1349817 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=852319 QYC34_RS07040 WP_029317573.1 1344244..1344822(+) (comK) [Bacillus subtilis strain SRCM126725]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=852319 QYC34_RS07040 WP_029317573.1 1344244..1344822(+) (comK) [Bacillus subtilis strain SRCM126725]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995