Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QYC34_RS01405 Genome accession   NZ_CP129338
Coordinates   262731..263021 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain SRCM126725     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 257731..268021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC34_RS01365 (QYC34_01365) darA 257754..258083 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  QYC34_RS01370 (QYC34_01370) yaaR 258096..258536 (+) 441 WP_009966249.1 YaaR family protein -
  QYC34_RS01375 (QYC34_01375) holB 258548..259537 (+) 990 WP_153952900.1 DNA polymerase III subunit delta' -
  QYC34_RS01380 (QYC34_01380) ricT 259540..260367 (+) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  QYC34_RS01385 (QYC34_01385) yabA 260382..260741 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  QYC34_RS01390 (QYC34_01390) trmNF 260800..261543 (+) 744 WP_077671692.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QYC34_RS01395 (QYC34_01395) yazA 261530..261829 (+) 300 WP_069837179.1 GIY-YIG nuclease family protein -
  QYC34_RS01400 (QYC34_01400) rsmI 261804..262682 (+) 879 WP_019712967.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QYC34_RS01405 (QYC34_01405) abrB 262731..263021 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  QYC34_RS01410 (QYC34_01410) metG 263516..265510 (+) 1995 WP_014478594.1 methionine--tRNA ligase -
  QYC34_RS01415 (QYC34_01415) dayD 265590..266357 (+) 768 WP_087614201.1 TatD family hydrolase -
  QYC34_RS01420 (QYC34_01420) yabE 266513..267826 (+) 1314 WP_087614203.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=852304 QYC34_RS01405 WP_003226760.1 262731..263021(-) (abrB) [Bacillus subtilis strain SRCM126725]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=852304 QYC34_RS01405 WP_003226760.1 262731..263021(-) (abrB) [Bacillus subtilis strain SRCM126725]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1