Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V6S31_RS15405 Genome accession   NZ_CP145689
Coordinates   3110825..3111454 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   B7UN38
Organism   Escherichia coli strain S1-KEN-05-A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3105825..3116454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S31_RS15390 (V6S31_15360) helD 3106067..3108121 (-) 2055 WP_001295938.1 DNA helicase IV -
  V6S31_RS15395 (V6S31_15365) yccF 3108244..3108690 (+) 447 WP_001261235.1 YccF domain-containing protein -
  V6S31_RS15400 (V6S31_15370) yccS 3108700..3110862 (+) 2163 WP_000875041.1 YccS family putative transporter -
  V6S31_RS15405 (V6S31_15375) sxy/tfoX 3110825..3111454 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  V6S31_RS15410 (V6S31_15380) sulA 3111673..3112182 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  V6S31_RS15415 (V6S31_15385) ompA 3112538..3113590 (+) 1053 WP_001346420.1 porin OmpA -
  V6S31_RS15420 (V6S31_15390) matP 3113666..3114118 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  V6S31_RS15425 (V6S31_15395) ycbZ 3114304..3116064 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=852286 V6S31_RS15405 WP_000839151.1 3110825..3111454(-) (sxy/tfoX) [Escherichia coli strain S1-KEN-05-A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=852286 V6S31_RS15405 WP_000839151.1 3110825..3111454(-) (sxy/tfoX) [Escherichia coli strain S1-KEN-05-A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7UN38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995