Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   QYR55_RS08125 Genome accession   NZ_CP129328
Coordinates   1642465..1643190 (-) Length   241 a.a.
NCBI ID   WP_003101905.1    Uniprot ID   A0A3L8GF06
Organism   Streptococcus iniae strain Si 1-19     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1637465..1648190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR55_RS08095 (QYR55_08100) - 1637841..1638946 (+) 1106 WP_367561349.1 IS3 family transposase -
  QYR55_RS08100 (QYR55_08105) - 1638997..1639770 (+) 774 WP_003101893.1 sulfatase-like hydrolase/transferase -
  QYR55_RS08110 (QYR55_08115) trmB 1639941..1640579 (-) 639 WP_003101896.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  QYR55_RS08115 (QYR55_08120) ccrZ 1640579..1641370 (-) 792 WP_121796576.1 cell cycle regulator CcrZ -
  QYR55_RS08120 (QYR55_08125) - 1641431..1642462 (-) 1032 WP_016356131.1 ABC transporter permease -
  QYR55_RS08125 (QYR55_08130) pptA 1642465..1643190 (-) 726 WP_003101905.1 ABC transporter ATP-binding protein Regulator
  QYR55_RS08130 (QYR55_08135) - 1643388..1643807 (+) 420 WP_003101908.1 HIT family protein -
  QYR55_RS08135 (QYR55_08140) - 1643804..1644106 (+) 303 WP_003101910.1 hypothetical protein -
  QYR55_RS08140 (QYR55_08145) brpA 1644220..1645539 (-) 1320 WP_367562562.1 biofilm formation/cell division transcriptional regulator BrpA -
  QYR55_RS08145 (QYR55_08150) - 1645541..1646071 (-) 531 WP_003101915.1 GNAT family N-acetyltransferase -
  QYR55_RS08150 (QYR55_08155) tsaE 1646058..1646507 (-) 450 WP_031239039.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  QYR55_RS08155 (QYR55_08160) - 1646601..1648062 (-) 1462 Protein_1549 NCS2 family permease -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26959.33 Da        Isoelectric Point: 4.6255

>NTDB_id=852274 QYR55_RS08125 WP_003101905.1 1642465..1643190(-) (pptA) [Streptococcus iniae strain Si 1-19]
MLKIEHLTGGYLNIPVLKDVSFSVEDGQLVGLIGLNGAGKSTTINEIIGLLKPYQGKISIDGLTLDENMAEYRKKIGFIP
ETPSLYEELTLSEHLETIAMAYDIDVKLAMERAKPLLESYRLTDKLDWYPVNFSKGMKQKVMIICAFIIDPSLFILDEPF
LGLDPLAISDLISYLESEKVKGKSILMSTHVLDSAEKMCDRFVILHQGQVRAQGTLEELRQEFAQTGASLNDIYLALTRE
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=852274 QYR55_RS08125 WP_003101905.1 1642465..1643190(-) (pptA) [Streptococcus iniae strain Si 1-19]
ATGTTAAAAATTGAACATTTAACAGGAGGTTACCTTAATATTCCTGTTCTTAAAGACGTCAGCTTTTCTGTGGAAGACGG
TCAGCTGGTTGGTTTGATTGGTTTGAATGGTGCAGGTAAATCCACAACCATTAATGAAATCATCGGACTTTTGAAACCCT
ACCAAGGGAAAATCAGCATTGACGGCCTAACCTTAGATGAAAACATGGCAGAATACCGCAAAAAAATTGGTTTTATTCCG
GAAACACCAAGTCTTTATGAAGAACTGACTTTAAGTGAGCACCTTGAAACCATTGCCATGGCCTATGATATTGATGTGAA
ACTAGCCATGGAACGTGCTAAACCACTGCTTGAAAGCTATCGATTAACGGATAAATTAGACTGGTATCCGGTAAATTTTT
CTAAAGGAATGAAGCAAAAAGTCATGATTATTTGTGCTTTTATCATAGACCCAAGCCTCTTTATTTTAGACGAGCCATTT
TTAGGACTTGACCCATTAGCGATCTCAGACTTGATTAGCTACCTTGAAAGTGAAAAAGTTAAAGGCAAATCTATTTTGAT
GAGTACCCATGTCTTAGATTCCGCTGAAAAAATGTGTGATCGTTTTGTCATTTTACATCAGGGACAAGTTAGAGCACAGG
GAACTTTAGAAGAACTCAGACAAGAATTTGCTCAAACTGGAGCAAGCCTTAATGACATCTACCTTGCCTTAACAAGAGAG
GTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3L8GF06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

99.17

0.747
  pptA Streptococcus thermophilus LMD-9

74.059

99.17

0.734