Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   QYR57_RS09545 Genome accession   NZ_CP129327
Coordinates   1973526..1974239 (+) Length   237 a.a.
NCBI ID   WP_003100405.1    Uniprot ID   A0A3L8GBZ9
Organism   Streptococcus iniae strain Si 4-21     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1968526..1979239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR57_RS09535 (QYR57_09545) treC 1969677..1971303 (-) 1627 Protein_1857 alpha,alpha-phosphotrehalase -
  QYR57_RS09540 (QYR57_09550) treP 1971448..1973321 (-) 1874 Protein_1858 PTS system trehalose-specific EIIBC component -
  QYR57_RS09545 (QYR57_09555) treR 1973526..1974239 (+) 714 WP_003100405.1 trehalose operon repressor Regulator
  QYR57_RS09550 (QYR57_09560) yaaA 1974298..1975031 (+) 734 Protein_1860 peroxide stress protein YaaA -
  QYR57_RS09555 (QYR57_09565) nrdG 1975135..1975755 (-) 621 WP_367561659.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  QYR57_RS09560 (QYR57_09570) - 1975765..1976265 (-) 501 WP_003100408.1 GNAT family N-acetyltransferase -
  QYR57_RS09565 (QYR57_09575) - 1976276..1977208 (-) 933 WP_003100409.1 Gfo/Idh/MocA family protein -
  QYR57_RS09570 (QYR57_09580) - 1977202..1977384 (-) 183 WP_367561660.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27483.80 Da        Isoelectric Point: 9.5104

>NTDB_id=852236 QYR57_RS09545 WP_003100405.1 1973526..1974239(+) (treR) [Streptococcus iniae strain Si 4-21]
MKKYESIFKDLETKISKEVYAIDDFLPTEIELSKDYNVSRDTIRKALNLLAKAGLVKKQQGRGTQVIKHHHILFPISELT
SYQELVSYFDMDSKTNVIAIDKLIVDPKMEKLTGFPTHSLVWRVTRQRVVDGVASVLDIDYLDKDIVPNMTREIAQISLY
AFLEKDLKLSIDFALKEVTIDQVNDRDKILLDLGSDKHVVSVKSKVYLSNNKQFQFTESRHKLEKFKFVDFARRNPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=852236 QYR57_RS09545 WP_003100405.1 1973526..1974239(+) (treR) [Streptococcus iniae strain Si 4-21]
ATGAAGAAATACGAAAGCATTTTTAAAGACCTCGAAACAAAAATTTCAAAAGAAGTTTATGCCATAGATGACTTTTTACC
AACTGAAATCGAATTAAGTAAAGACTATAATGTTAGTAGGGATACTATTCGAAAAGCACTCAATCTTTTAGCAAAAGCTG
GTTTGGTCAAAAAACAACAAGGTCGAGGAACACAGGTGATTAAACACCACCATATTTTATTTCCTATATCTGAATTAACA
AGTTACCAAGAACTTGTTTCCTATTTTGATATGGATTCTAAAACCAACGTGATTGCTATTGACAAACTCATTGTTGATCC
TAAAATGGAAAAGTTGACTGGCTTTCCAACACATTCACTGGTTTGGCGCGTTACCAGACAAAGAGTGGTAGACGGGGTTG
CCTCTGTATTGGATATCGACTATTTGGACAAGGATATTGTGCCAAATATGACAAGGGAAATCGCCCAAATATCACTTTAT
GCCTTCTTGGAAAAAGACTTAAAACTGTCTATTGATTTTGCTCTAAAGGAAGTCACTATCGATCAAGTCAATGACCGAGA
TAAAATTCTATTAGATCTTGGTTCAGACAAACATGTGGTTTCTGTCAAATCTAAAGTATACCTCTCAAATAACAAGCAAT
TTCAATTTACTGAAAGCCGACATAAATTAGAGAAATTCAAATTTGTTGATTTTGCAAGACGCAATCCCAAATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(92-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3L8GBZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

67.66

99.156

0.671