Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   QYR57_RS07840 Genome accession   NZ_CP129327
Coordinates   1592722..1593447 (-) Length   241 a.a.
NCBI ID   WP_003101905.1    Uniprot ID   A0A3L8GF06
Organism   Streptococcus iniae strain Si 4-21     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1587722..1598447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR57_RS07810 (QYR57_07815) - 1588098..1589203 (+) 1106 WP_367561349.1 IS3 family transposase -
  QYR57_RS07815 (QYR57_07820) - 1589254..1590027 (+) 774 WP_003101893.1 sulfatase-like hydrolase/transferase -
  QYR57_RS07825 (QYR57_07830) trmB 1590198..1590836 (-) 639 WP_003101896.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  QYR57_RS07830 (QYR57_07835) ccrZ 1590836..1591627 (-) 792 WP_003101899.1 cell cycle regulator CcrZ -
  QYR57_RS07835 (QYR57_07840) - 1591688..1592719 (-) 1032 WP_367561504.1 ABC transporter permease -
  QYR57_RS07840 (QYR57_07845) pptA 1592722..1593447 (-) 726 WP_003101905.1 ABC transporter ATP-binding protein Regulator
  QYR57_RS07845 (QYR57_07850) - 1593645..1594064 (+) 420 WP_003101908.1 HIT family protein -
  QYR57_RS07850 (QYR57_07855) - 1594061..1594363 (+) 303 WP_003101910.1 hypothetical protein -
  QYR57_RS07855 (QYR57_07860) brpA 1594477..1595797 (-) 1321 Protein_1522 biofilm formation/cell division transcriptional regulator BrpA -
  QYR57_RS07860 (QYR57_07865) - 1595799..1596329 (-) 531 WP_003101915.1 GNAT family N-acetyltransferase -
  QYR57_RS07865 (QYR57_07870) tsaE 1596316..1596765 (-) 450 WP_031239039.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  QYR57_RS07870 (QYR57_07875) - 1596859..1598319 (-) 1461 WP_367561505.1 NCS2 family permease -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26959.33 Da        Isoelectric Point: 4.6255

>NTDB_id=852228 QYR57_RS07840 WP_003101905.1 1592722..1593447(-) (pptA) [Streptococcus iniae strain Si 4-21]
MLKIEHLTGGYLNIPVLKDVSFSVEDGQLVGLIGLNGAGKSTTINEIIGLLKPYQGKISIDGLTLDENMAEYRKKIGFIP
ETPSLYEELTLSEHLETIAMAYDIDVKLAMERAKPLLESYRLTDKLDWYPVNFSKGMKQKVMIICAFIIDPSLFILDEPF
LGLDPLAISDLISYLESEKVKGKSILMSTHVLDSAEKMCDRFVILHQGQVRAQGTLEELRQEFAQTGASLNDIYLALTRE
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=852228 QYR57_RS07840 WP_003101905.1 1592722..1593447(-) (pptA) [Streptococcus iniae strain Si 4-21]
ATGTTAAAAATTGAACATTTAACAGGAGGTTACCTTAATATTCCTGTTCTTAAAGACGTCAGCTTTTCTGTGGAAGACGG
TCAGCTGGTTGGTTTGATTGGTTTGAATGGTGCAGGTAAATCCACAACCATTAATGAAATCATCGGACTTTTGAAACCCT
ACCAAGGGAAAATCAGCATTGACGGCCTAACCTTAGATGAAAACATGGCAGAATACCGCAAAAAAATTGGTTTTATTCCG
GAAACACCAAGTCTTTATGAAGAACTGACTTTAAGTGAGCACCTTGAAACCATTGCCATGGCCTATGATATTGATGTGAA
ACTAGCCATGGAACGTGCTAAACCACTGCTTGAAAGCTATCGATTAACGGATAAATTAGACTGGTATCCGGTAAATTTTT
CTAAAGGAATGAAGCAAAAAGTCATGATTATTTGTGCTTTTATCATAGACCCAAGCCTCTTTATTTTAGACGAGCCATTT
TTAGGACTTGACCCATTAGCGATCTCAGACTTGATTAGCTACCTTGAAAGTGAAAAAGTTAAAGGCAAATCTATTTTGAT
GAGTACCCATGTCTTAGATTCCGCTGAAAAAATGTGTGATCGTTTTGTCATTTTACATCAGGGACAAGTTAGAGCACAGG
GAACTTTAGAAGAACTCAGACAAGAATTTGCTCAAACTGGAGCAAGCCTTAATGACATCTACCTTGCCTTAACAAGAGAG
GTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3L8GF06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

99.17

0.747
  pptA Streptococcus thermophilus LMD-9

74.059

99.17

0.734