Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   V6S32_RS23170 Genome accession   NZ_CP145683
Coordinates   4737483..4737959 (+) Length   158 a.a.
NCBI ID   WP_001186171.1    Uniprot ID   -
Organism   Escherichia coli strain S1-KEN-07-A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4732483..4742959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S32_RS23140 (V6S32_23145) - 4733152..4734036 (+) 885 WP_000010408.1 GTPase -
  V6S32_RS23145 (V6S32_23150) - 4734239..4734919 (+) 681 WP_001282919.1 WYL domain-containing protein -
  V6S32_RS23150 (V6S32_23155) - 4735067..4735744 (+) 678 WP_001097301.1 hypothetical protein -
  V6S32_RS23155 (V6S32_23160) - 4735750..4735983 (+) 234 WP_001278287.1 DUF905 family protein -
  V6S32_RS23160 (V6S32_23165) - 4736073..4736891 (+) 819 WP_001175163.1 DUF932 domain-containing protein -
  V6S32_RS23165 (V6S32_23170) - 4736983..4737468 (+) 486 WP_000206666.1 antirestriction protein -
  V6S32_RS23170 (V6S32_23175) radC 4737483..4737959 (+) 477 WP_001186171.1 RadC family protein Machinery gene
  V6S32_RS23175 (V6S32_23180) - 4738022..4738243 (+) 222 WP_000692300.1 DUF987 domain-containing protein -
  V6S32_RS23180 (V6S32_23185) - 4738322..4738687 (+) 366 WP_021562928.1 type IV toxin-antitoxin system YeeU family antitoxin -
  V6S32_RS23185 (V6S32_23190) - 4738777..4739154 (+) 378 WP_000854681.1 TA system toxin CbtA family protein -
  V6S32_RS23190 (V6S32_23195) - 4739151..4739300 (+) 150 Protein_4534 DUF5983 family protein -
  V6S32_RS23195 (V6S32_23200) - 4739376..4739573 (+) 198 WP_023563519.1 DUF957 domain-containing protein -
  V6S32_RS23200 (V6S32_23205) - 4739658..4740500 (+) 843 WP_001280503.1 DUF4942 domain-containing protein -
  V6S32_RS23205 (V6S32_23210) - 4741096..4741593 (+) 498 WP_000509811.1 hypothetical protein -
  V6S32_RS23210 (V6S32_23215) yicL 4741760..4742683 (+) 924 WP_000535950.1 carboxylate/amino acid/amine transporter -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17683.27 Da        Isoelectric Point: 6.9859

>NTDB_id=852226 V6S32_RS23170 WP_001186171.1 4737483..4737959(+) (radC) [Escherichia coli strain S1-KEN-07-A]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=852226 V6S32_RS23170 WP_001186171.1 4737483..4737959(+) (radC) [Escherichia coli strain S1-KEN-07-A]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGTGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386