Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QYR57_RS02880 Genome accession   NZ_CP129327
Coordinates   574537..576339 (+) Length   600 a.a.
NCBI ID   WP_367561909.1    Uniprot ID   -
Organism   Streptococcus iniae strain Si 4-21     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 572575..573680 574537..576339 flank 857


Gene organization within MGE regions


Location: 572575..576339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR57_RS02875 (QYR57_02875) - 573813..574511 (+) 699 Protein_534 competence protein CoiA family protein -
  QYR57_RS02880 (QYR57_02880) pepF 574537..576339 (+) 1803 WP_367561909.1 oligoendopeptidase F Regulator

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69775.94 Da        Isoelectric Point: 5.0039

>NTDB_id=852211 QYR57_RS02880 WP_367561909.1 574537..576339(+) (pepF) [Streptococcus iniae strain Si 4-21]
MSDNRSHLEEKYTWDLSTIFASDRDWEMELNVLVKQVEEAKKWAGHLVESASNLLTITEIELDLSRRIETVYVYAHMKND
QDTTVAKYQEYQAKASALYAKFSEVFSFYEPEFMALEADKFQQFLKEESKLNDYRHFFDKLLHSKKHVLSQAEEELLAGA
QEIFNGAEETFSIFDNADVIFPTVMDDKGQEVEITHGNFISLMESKNRKVRQDAYEGLYSTYEQFQHTYAKTLQTNVKVQ
NFKARVHKYDSARHAAMSANFIPESVYDTLLTAVHKHLPLLHRYLKLRQEILGLNQLKMYDVYTPLSATDLSIPYDQAIE
KAEKVLSIFGDEYAKHVHHAFADRWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDNLDNMFTLVHETGHSLHSTFTRQT
QPYVYGDYSIFLAEIASTTNENILTEALLNEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQNGQVLTSEF
LNTLYADLNEKYYGLSKEDNHFIQYEWARIPHFYYNYYVYQYATGFVVASYLANKIVHGEQEDINRYLDYLKAGNSDYPL
NVIAKAGVDMTNETYLNEAFAVFEERLTELEKLVEKGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=852211 QYR57_RS02880 WP_367561909.1 574537..576339(+) (pepF) [Streptococcus iniae strain Si 4-21]
ATGTCAGATAATCGTAGCCATTTAGAAGAAAAATATACTTGGGATTTAAGCACTATTTTTGCTAGTGATAGAGACTGGGA
AATGGAGCTTAATGTACTTGTTAAGCAAGTAGAAGAAGCTAAAAAATGGGCAGGACATTTAGTAGAGTCTGCTAGTAATT
TATTAACTATTACTGAGATTGAGTTGGACTTGTCACGAAGAATTGAGACTGTCTATGTCTATGCTCATATGAAAAATGAC
CAGGATACTACTGTAGCCAAATATCAAGAATACCAAGCAAAAGCATCGGCTTTATATGCTAAATTTAGTGAAGTCTTTTC
ATTTTATGAACCAGAATTTATGGCACTTGAAGCAGATAAGTTTCAACAATTCCTTAAAGAAGAATCAAAATTAAATGATT
ATAGACATTTCTTTGACAAACTGTTACATAGTAAAAAGCATGTTTTGTCTCAAGCAGAAGAAGAGCTATTGGCTGGTGCA
CAAGAAATTTTTAATGGTGCTGAAGAAACATTTAGTATTTTTGACAATGCCGATGTGATTTTTCCAACAGTTATGGATGA
CAAAGGCCAAGAAGTGGAAATCACGCATGGAAACTTTATCAGTTTGATGGAATCCAAAAACCGTAAGGTGCGTCAAGATG
CTTATGAAGGTCTTTATAGTACCTATGAACAATTCCAACACACTTATGCTAAAACATTGCAAACAAATGTTAAGGTTCAA
AATTTCAAAGCACGTGTTCATAAATATGATTCAGCTCGTCATGCGGCTATGTCAGCAAACTTTATTCCAGAATCTGTTTA
TGATACTCTTCTAACAGCAGTTCATAAGCATTTGCCACTGTTACATCGTTATTTAAAGCTACGCCAGGAAATTCTCGGTC
TTAATCAGTTAAAAATGTATGATGTCTACACGCCACTTTCTGCAACAGATTTATCGATTCCTTATGATCAAGCTATTGAA
AAAGCAGAAAAAGTCTTATCTATTTTTGGTGACGAATATGCTAAACATGTTCATCATGCTTTTGCAGATCGTTGGATTGA
TGTGCATGTTAATAAAGGAAAACGTTCAGGTGCCTATTCAGGTGGTTCATATGATACGAATGCCTTTATGCTCTTGAATT
GGCAAGATAATTTGGATAATATGTTTACTCTGGTTCACGAGACTGGTCATAGTTTACATTCAACCTTTACTCGTCAAACA
CAGCCTTATGTTTATGGTGATTATAGTATTTTCTTGGCGGAGATTGCTTCAACGACTAATGAAAATATTCTGACAGAAGC
TTTATTGAATGAGGTAGAAGACGACAAAGAGCGTTTTGCAATTTTAAATCATTATCTTGATGGTTTCCGTGGAACTGTTT
TCCGTCAGACACAATTTGCTGAATTTGAACATGCTATTCATCAAGCAGATCAAAATGGACAAGTGCTTACAAGTGAATTC
CTTAACACCCTTTATGCTGATTTAAATGAAAAGTATTATGGCTTATCTAAAGAAGACAACCATTTTATTCAATACGAATG
GGCTCGTATTCCTCATTTCTATTACAATTACTATGTTTACCAATATGCAACTGGCTTTGTCGTGGCTAGCTATTTAGCCA
ATAAAATTGTTCATGGTGAGCAAGAAGACATAAACCGTTATTTAGACTATCTTAAAGCTGGAAATTCGGATTACCCATTA
AATGTTATTGCTAAGGCTGGTGTTGATATGACGAATGAGACTTACCTTAACGAAGCATTTGCAGTTTTTGAGGAACGTTT
AACTGAACTTGAAAAACTGGTTGAAAAAGGTGCGCATTTGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

70.333

100

0.703