Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QYR59_RS09305 Genome accession   NZ_CP129326
Coordinates   1884994..1886358 (-) Length   454 a.a.
NCBI ID   WP_367561608.1    Uniprot ID   -
Organism   Streptococcus iniae strain P3SAB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1879994..1891358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR59_RS09285 (QYR59_09290) tnpA 1881220..1881684 (-) 465 WP_003100201.1 IS200/IS605 family transposase -
  QYR59_RS09290 (QYR59_09295) gltX 1881874..1883319 (-) 1446 WP_367561606.1 glutamate--tRNA ligase -
  QYR59_RS09295 (QYR59_09300) - 1883513..1884226 (-) 714 WP_003100205.1 TIGR00266 family protein -
  QYR59_RS09300 (QYR59_09305) - 1884348..1884848 (-) 501 WP_003100206.1 carbonic anhydrase -
  QYR59_RS09305 (QYR59_09310) radA 1884994..1886358 (-) 1365 WP_367561608.1 DNA repair protein RadA Machinery gene
  QYR59_RS09310 (QYR59_09315) - 1886382..1886825 (-) 444 WP_003100209.1 dUTP diphosphatase -
  QYR59_RS09315 (QYR59_09320) - 1886960..1888375 (-) 1416 WP_367561609.1 PTS transporter subunit EIIC -
  QYR59_RS09320 (QYR59_09325) - 1888365..1890038 (-) 1674 WP_367562252.1 alpha-glucosidase -
  QYR59_RS09325 (QYR59_09330) - 1890165..1890878 (-) 714 WP_367561611.1 MurR/RpiR family transcriptional regulator -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49656.08 Da        Isoelectric Point: 6.7550

>NTDB_id=852185 QYR59_RS09305 WP_367561608.1 1884994..1886358(-) (radA) [Streptococcus iniae strain P3SAB]
MAKKKTQFICQECGYQSPKYLGRCPNCSAWSSFVEEIEVKEVKNARVSLTGEKSKPVKLKDVDNIHYARTKTDMDEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLATKGTVLYVSGEESAEQIKLRSERLGDVDNEFYLYAETNMQQVRAEIE
KLQPDFLIIDSIQTMMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTIAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKLYAPKNSLQGISVPKGIEVIGVSTVGQVLKAVFSH

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=852185 QYR59_RS09305 WP_367561608.1 1884994..1886358(-) (radA) [Streptococcus iniae strain P3SAB]
ATGGCAAAAAAGAAAACACAATTTATCTGTCAAGAATGTGGCTATCAGTCGCCTAAGTACTTAGGGCGTTGCCCCAATTG
CTCCGCTTGGTCATCTTTTGTGGAAGAAATTGAAGTTAAAGAGGTTAAGAACGCTCGGGTTAGCCTGACGGGCGAAAAAA
GTAAACCCGTTAAATTAAAAGACGTTGATAACATTCACTATGCCAGAACGAAAACTGATATGGATGAGTTTAACCGTGTT
TTAGGTGGTGGTGTTGTTCCTGGAAGTTTAATTCTGATTGGTGGTGATCCAGGGATTGGAAAGTCTACCCTCTTATTACA
AGTGTCAACTCAACTTGCGACAAAAGGAACAGTACTTTATGTTTCAGGTGAGGAGTCAGCTGAGCAAATTAAATTGCGTA
GTGAACGTCTTGGTGATGTGGATAATGAATTTTACCTCTATGCTGAAACTAATATGCAACAGGTTCGTGCTGAGATTGAA
AAATTACAACCAGACTTTCTTATTATTGACTCTATTCAAACCATGATGAGTCCAGATATTACTGGTGTTCAAGGATCTGT
CAGTCAGGTTAGAGAAGTAACAGCTGAGCTGATGCAGTTGGCTAAAACCAATAACATCGCAACCTTTATTGTTGGGCATG
TGACAAAAGAAGGAACTATTGCAGGACCTCGGATGTTGGAACATATGGTAGATACTGTTCTTTATTTTGAAGGGGAGCGC
CACCATACTTTTCGTATTTTACGGGCTGTTAAAAACCGTTTTGGTTCAACCAATGAAATTGGTATTTTTGAGATGCAATC
TGGTGGCTTAGTTGAAGTGCTCAATCCTAGTCAAGTTTTTCTGGAAGAACGCCTTGATGGTGCAACGGGTTCAGCTATTG
TGGTTACAATGGAGGGGAGTCGTCCTATCTTAGCTGAGGTTCAATCTCTTGTGACACCAACTGTTTTTGGTAATGCCAGA
CGAACAACAACAGGTCTTGATTTTAACCGAGTGAGTTTAATTATGGCGGTGCTTGAAAAACGTTGTGGCTTACTCTTGCA
GAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTCAAATTAGATGAGCCAGCTATTGATTTAGCAGTTGCAGTTGCAA
TTGCATCGAGTTATAAAGAAAAACCAACCAATCCACAAGAAGCATTTCTTGGAGAAATTGGCTTGACTGGGGAAATTCGC
CGTGTGACGCGTATTGAGCAACGGATAAATGAAGCGGCAAAGCTTGGCTTTACAAAACTATATGCTCCTAAGAATTCCTT
ACAAGGGATAAGTGTTCCAAAAGGAATTGAAGTCATTGGGGTGTCGACAGTTGGTCAAGTGTTAAAGGCTGTCTTCTCAC
ATTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

86.313

99.78

0.861
  radA Streptococcus pneumoniae D39

86.313

99.78

0.861
  radA Streptococcus pneumoniae R6

86.313

99.78

0.861
  radA Streptococcus pneumoniae TIGR4

86.313

99.78

0.861
  radA Streptococcus mitis NCTC 12261

86.093

99.78

0.859
  radA Streptococcus mitis SK321

86.093

99.78

0.859
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.78

0.626