Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   QYR59_RS02245 Genome accession   NZ_CP129326
Coordinates   418247..419173 (+) Length   308 a.a.
NCBI ID   WP_003100863.1    Uniprot ID   -
Organism   Streptococcus iniae strain P3SAB     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 413247..424173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR59_RS02235 (QYR59_02235) - 414703..416683 (+) 1981 Protein_387 peptide ABC transporter substrate-binding protein -
  QYR59_RS02240 (QYR59_02240) amiC 416748..418247 (+) 1500 WP_003100862.1 ABC transporter permease Regulator
  QYR59_RS02245 (QYR59_02245) amiD 418247..419173 (+) 927 WP_003100863.1 oligopeptide ABC transporter permease OppC Regulator
  QYR59_RS02250 (QYR59_02250) amiE 419182..420249 (+) 1068 WP_003100864.1 ABC transporter ATP-binding protein Regulator
  QYR59_RS02255 (QYR59_02255) amiF 420242..421165 (+) 924 WP_367561839.1 ATP-binding cassette domain-containing protein Regulator
  QYR59_RS02260 (QYR59_02260) - 421630..422797 (-) 1168 Protein_392 IS30-like element ISSag9 family transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34540.45 Da        Isoelectric Point: 7.1552

>NTDB_id=852156 QYR59_RS02245 WP_003100863.1 418247..419173(+) (amiD) [Streptococcus iniae strain P3SAB]
MATIDKSKFEFVELDSYASEVIDAPAYSYWKSVFRQFFARKSTIVMLLILITIILMSFIYPMFANYDFGDVSNINDFTKR
YISPNGEYWFGTDKNGQSLFDGVWYGARNSILISVIATMINMILGVIIGGLWGVSKAVDKVMIEVYNVISNLPQMLIIIV
LTYSIGAGFWNLIFAFCITGWIGIAYAVRVQVLRYRDLEYNLASQTLGTPTHKIVTKNLLPQLVSVIVSMVSLLLPAYIS
SEAFLSFFGLGLPLSEPSLGRLISNYSSNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=852156 QYR59_RS02245 WP_003100863.1 418247..419173(+) (amiD) [Streptococcus iniae strain P3SAB]
ATGGCGACAATAGACAAAAGTAAGTTCGAATTTGTTGAACTGGATTCTTATGCATCAGAAGTTATTGATGCCCCTGCTTA
CTCCTACTGGAAATCTGTTTTTAGACAATTTTTTGCGCGGAAATCTACTATAGTAATGTTGCTTATTTTGATTACTATTA
TTTTAATGAGCTTTATTTACCCAATGTTTGCCAACTATGATTTTGGTGATGTTAGCAATATCAATGATTTTACCAAGCGC
TACATTTCTCCAAATGGGGAATATTGGTTTGGTACAGATAAAAACGGGCAGTCGCTTTTTGATGGGGTTTGGTATGGTGC
TAGAAACTCAATCTTAATTTCTGTCATTGCAACAATGATTAACATGATTTTGGGTGTAATCATTGGAGGACTTTGGGGTG
TTTCTAAAGCTGTTGATAAAGTAATGATTGAAGTTTACAATGTCATTTCCAATCTGCCACAAATGCTGATTATCATTGTT
TTGACTTACTCCATTGGTGCAGGTTTCTGGAACTTGATTTTTGCTTTTTGTATTACAGGATGGATTGGTATTGCTTACGC
GGTTCGTGTCCAAGTGTTACGTTACCGTGATTTGGAATATAATTTAGCTAGTCAAACACTGGGAACGCCAACACATAAAA
TTGTAACAAAAAACCTTTTACCACAATTGGTTTCAGTTATTGTGTCAATGGTTTCCTTGTTACTTCCAGCCTATATTTCT
TCAGAAGCGTTTCTATCCTTCTTTGGATTAGGCTTACCGCTATCAGAGCCAAGTTTAGGTCGTTTAATTTCAAACTATTC
CTCTAATTTAACAACAAATGCCTATCTTTTCTGGATTCCATTAACCACTCTTATCTTAGTATCTCTTCCACTCTATATTG
TGGGCCAAAATTTGGCAGATGCTAGTGACCCAAGAACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

72.727

100

0.727
  amiD Streptococcus thermophilus LMG 18311

72.403

100

0.724
  amiD Streptococcus thermophilus LMD-9

72.403

100

0.724