Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   Pta6605_RS19840 Genome accession   NZ_AP024464
Coordinates   4512178..4512855 (-) Length   225 a.a.
NCBI ID   WP_002552676.1    Uniprot ID   A0A108WR79
Organism   Pseudomonas amygdali pv. tabaci strain 6605     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4507178..4517855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Pta6605_RS19815 (Pta6605_40020) murB 4508737..4509756 (-) 1020 WP_010202202.1 UDP-N-acetylmuramate dehydrogenase -
  Pta6605_RS19820 (Pta6605_40030) kdsB 4509791..4510555 (-) 765 WP_004657844.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  Pta6605_RS19825 (Pta6605_40040) - 4510552..4510737 (-) 186 WP_002552679.1 Trm112 family protein -
  Pta6605_RS19830 (Pta6605_40050) lpxK 4510755..4511750 (-) 996 WP_016981645.1 tetraacyldisaccharide 4'-kinase -
  Pta6605_RS19835 (Pta6605_40060) - 4511750..4512181 (-) 432 WP_002552677.1 ExbD/TolR family protein -
  Pta6605_RS19840 (Pta6605_40070) exbB 4512178..4512855 (-) 678 WP_002552676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  Pta6605_RS19845 (Pta6605_40080) comA 4512937..4515153 (-) 2217 WP_016981642.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Pta6605_RS19850 (Pta6605_40090) - 4515290..4516078 (-) 789 WP_002552673.1 ABC transporter permease -
  Pta6605_RS19855 (Pta6605_40100) - 4516075..4517007 (-) 933 WP_002552672.1 ABC transporter ATP-binding protein -
  Pta6605_RS19860 (Pta6605_40110) - 4517191..4517814 (-) 624 WP_004657835.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24212.52 Da        Isoelectric Point: 8.5280

>NTDB_id=85215 Pta6605_RS19840 WP_002552676.1 4512178..4512855(-) (exbB) [Pseudomonas amygdali pv. tabaci strain 6605]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGVLAGGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=85215 Pta6605_RS19840 WP_002552676.1 4512178..4512855(-) (exbB) [Pseudomonas amygdali pv. tabaci strain 6605]
GTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCCGATTATTTTGAGCTCCATCGCCGCTGCCGGCATTATCAT
CGAGCGTCTGTGGACGCTGCGTGCCAGCCGTATCACGCCGCCGCATCTGCTCGGACAGGTCTGGCAGTGGATTCAGGAAA
AGAAGCTCGACGGCGAAAAGCTCAAGCAACTGCGCGCCGACTCGCCTCTGGGTGAAATTCTCGCCGCAGGTCTGGCCAAT
TCCAGGCACGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCCCGGGTTATCCATGAACTGGAGCGCTACCT
GAGCGCGCTGGGTTCGATTGCCGCCATGGCACCGCTGCTTGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCG
GCTCGTTCAACAGTTCGGGGGCCACGGCCAATGCTGGTGTACTCGCCGGTGGTATCTCCAAGGCGCTGATCTGTACCGCG
TCGGGCCTTATCGTGGCTATTCCGGCAATCTTCTTTCATCGCTTTCTGCAAAGTCGCGTCGATGAGCTGGTGGTCGGCAT
GGAGCAGCAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCGACCGCGATGTCGATCTGATCGACGCCAAAATCGATCTCA
AGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A108WR79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738

Multiple sequence alignment