Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   V6S33_RS17355 Genome accession   NZ_CP145679
Coordinates   3561963..3562700 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain S1-NGR-02-A     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3556963..3567700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S33_RS17340 (V6S33_17340) clpC 3557417..3559990 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  V6S33_RS17345 (V6S33_17345) yfiH 3560120..3560851 (-) 732 WP_000040112.1 purine nucleoside phosphorylase YfiH -
  V6S33_RS17350 (V6S33_17350) rluD 3560848..3561828 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  V6S33_RS17355 (V6S33_17355) comL 3561963..3562700 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  V6S33_RS17360 (V6S33_17360) raiA 3562971..3563312 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  V6S33_RS17365 (V6S33_17365) pheL 3563416..3563463 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  V6S33_RS17370 (V6S33_17370) pheA 3563562..3564722 (+) 1161 WP_000200139.1 bifunctional chorismate mutase/prephenate dehydratase -
  V6S33_RS17375 (V6S33_17375) tyrA 3564765..3565886 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  V6S33_RS17380 (V6S33_17380) aroF 3565897..3566967 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  V6S33_RS17385 (V6S33_17385) yfiL 3567177..3567542 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=852111 V6S33_RS17355 WP_000197686.1 3561963..3562700(+) (comL) [Escherichia coli strain S1-NGR-02-A]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=852111 V6S33_RS17355 WP_000197686.1 3561963..3562700(+) (comL) [Escherichia coli strain S1-NGR-02-A]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376