Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   V6S34_RS20525 Genome accession   NZ_CP145671
Coordinates   4166093..4166569 (-) Length   158 a.a.
NCBI ID   WP_001186725.1    Uniprot ID   -
Organism   Escherichia coli strain S1-ZIM-01-A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4161093..4171569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S34_RS20490 (V6S34_20490) kpsS 4162693..4163913 (+) 1221 WP_000794251.1 capsular biosynthesis protein Regulator
  V6S34_RS20495 (V6S34_20495) - 4163939..4164169 (-) 231 Protein_4001 hypothetical protein -
  V6S34_RS20500 (V6S34_20500) - 4164275..4164451 (-) 177 WP_000839288.1 DUF957 domain-containing protein -
  V6S34_RS20505 (V6S34_20505) - 4164468..4164898 (-) 431 Protein_4003 DUF5983 family protein -
  V6S34_RS20510 (V6S34_20510) cbtA 4164895..4165272 (-) 378 WP_000854811.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  V6S34_RS20515 (V6S34_20515) cbeA 4165361..4165729 (-) 369 WP_001285590.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  V6S34_RS20520 (V6S34_20520) yeeT 4165803..4166024 (-) 222 WP_000692300.1 DUF987 domain-containing protein -
  V6S34_RS20525 (V6S34_20525) radC 4166093..4166569 (-) 477 WP_001186725.1 RadC family protein Machinery gene
  V6S34_RS20530 (V6S34_20530) - 4166585..4167070 (-) 486 WP_000214310.1 antirestriction protein -
  V6S34_RS20535 (V6S34_20535) - 4167162..4167980 (-) 819 WP_001234593.1 DUF932 domain-containing protein -
  V6S34_RS20540 (V6S34_20540) - 4168098..4168269 (-) 172 Protein_4010 DUF905 family protein -
  V6S34_RS20545 (V6S34_20545) - 4168370..4168825 (-) 456 WP_000581502.1 IrmA family protein -
  V6S34_RS20550 (V6S34_20550) - 4168901..4171416 (-) 2516 Protein_4012 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.32 Da        Isoelectric Point: 7.2020

>NTDB_id=852046 V6S34_RS20525 WP_001186725.1 4166093..4166569(-) (radC) [Escherichia coli strain S1-ZIM-01-A]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=852046 V6S34_RS20525 WP_001186725.1 4166093..4166569(-) (radC) [Escherichia coli strain S1-ZIM-01-A]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTACTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCCGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAGTCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399