Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V6S34_RS06915 Genome accession   NZ_CP145671
Coordinates   1326389..1327018 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain S1-ZIM-01-A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1321389..1332018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S34_RS06900 (V6S34_06900) helD 1321631..1323685 (-) 2055 WP_001305911.1 DNA helicase IV -
  V6S34_RS06905 (V6S34_06905) yccF 1323808..1324254 (+) 447 WP_001261235.1 YccF domain-containing protein -
  V6S34_RS06910 (V6S34_06910) yccS 1324264..1326426 (+) 2163 WP_000875041.1 YccS family putative transporter -
  V6S34_RS06915 (V6S34_06915) sxy/tfoX 1326389..1327018 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  V6S34_RS06920 (V6S34_06920) sulA 1327237..1327746 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  V6S34_RS06925 (V6S34_06925) ompA 1328102..1329142 (+) 1041 WP_001309394.1 porin OmpA -
  V6S34_RS06930 (V6S34_06930) matP 1329218..1329670 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  V6S34_RS06935 (V6S34_06935) ycbZ 1329856..1331616 (+) 1761 WP_000156482.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=851992 V6S34_RS06915 WP_000839153.1 1326389..1327018(-) (sxy/tfoX) [Escherichia coli strain S1-ZIM-01-A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=851992 V6S34_RS06915 WP_000839153.1 1326389..1327018(-) (sxy/tfoX) [Escherichia coli strain S1-ZIM-01-A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1