Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QWY22_RS08595 Genome accession   NZ_CP129238
Coordinates   1698236..1699933 (+) Length   565 a.a.
NCBI ID   WP_300983996.1    Uniprot ID   -
Organism   Planococcus sp. N056     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1693236..1704933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWY22_RS08570 (QWY22_08570) xseB 1693662..1693898 (+) 237 WP_300983990.1 exodeoxyribonuclease VII small subunit -
  QWY22_RS08575 (QWY22_08575) - 1693895..1694773 (+) 879 WP_300983991.1 polyprenyl synthetase family protein -
  QWY22_RS08580 (QWY22_08580) dxs 1694866..1696770 (+) 1905 WP_300983993.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QWY22_RS08585 (QWY22_08585) - 1696767..1697588 (+) 822 WP_300983995.1 TlyA family RNA methyltransferase -
  QWY22_RS08590 (QWY22_08590) argR 1697770..1698219 (+) 450 WP_036809248.1 transcriptional regulator ArgR -
  QWY22_RS08595 (QWY22_08595) recN 1698236..1699933 (+) 1698 WP_300983996.1 DNA repair protein RecN Machinery gene
  QWY22_RS08600 (QWY22_08600) spo0A 1699969..1700727 (+) 759 WP_300983997.1 sporulation transcription factor Spo0A -
  QWY22_RS08605 (QWY22_08605) - 1700881..1701348 (+) 468 WP_300983998.1 plastocyanin/azurin family copper-binding protein -
  QWY22_RS08610 (QWY22_08610) - 1701463..1702188 (+) 726 WP_300984000.1 glycerophosphodiester phosphodiesterase family protein -
  QWY22_RS08615 (QWY22_08615) - 1702259..1702492 (-) 234 WP_036809233.1 DUF2627 domain-containing protein -
  QWY22_RS08620 (QWY22_08620) - 1702618..1704663 (+) 2046 WP_300984001.1 sigma-54-dependent Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63779.46 Da        Isoelectric Point: 5.0403

>NTDB_id=851794 QWY22_RS08595 WP_300983996.1 1698236..1699933(+) (recN) [Planococcus sp. N056]
MLRELDIRNFAIIDALTVSFTDGLTVLTGETGAGKSIIIDAVHLLAGGRGSQEFIRHGAKKAEIEGLFSLDNEKHPVFRK
LDEFGITSSDGDILLRRELNDKGKNVCRINGKLVTISILREVGAALIDIHGQHETQELMDEKQHVYLLDQFAGKSIAKAK
ESYLNTYDKYLKLKREFASYNENEQQIAQKIDLLTFQLREIEAAELVAGEEEELQQERKRLQNFNKIYESVSAAHEAIQG
ESKGLDWVGSAMSELEHAASVDEAFSSQSETLSSAFYQLQDVSTEIKRVIDDMEFDPERLNEIEQRLTLLQSLKRKYGAS
VEDMLLYYETQVDELDRLINRDQRLQLDQEKLKELTEDLRVEAEELTILRKKASKQLGHAIMEQLQALHMGKASFEVNFS
SLPNGRFDRNGRDMIAFYISTNLGEPLKPLTKVASGGELSRMMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
AAISVHSQVLCISHLPQVAAMADQHLFIEKKVEKQRTVTSVHELDGQERTEEMSRMLSGAEITELTLQHAEELLTLARDR
KLTMR

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=851794 QWY22_RS08595 WP_300983996.1 1698236..1699933(+) (recN) [Planococcus sp. N056]
ATGCTGCGGGAACTGGATATACGCAATTTCGCCATTATCGATGCACTGACCGTCAGCTTTACGGATGGATTGACCGTGTT
GACCGGGGAAACCGGTGCCGGCAAATCGATCATCATTGATGCGGTGCATTTATTGGCAGGGGGGCGCGGTAGCCAAGAAT
TTATACGGCACGGCGCTAAAAAAGCAGAAATTGAAGGTCTTTTTTCTTTGGACAATGAAAAACATCCAGTGTTCCGTAAA
CTGGATGAATTTGGAATAACCTCGAGCGACGGCGATATTTTGCTGCGCCGAGAGCTGAATGATAAAGGGAAAAATGTGTG
CCGCATCAACGGGAAACTGGTGACCATTTCGATTCTCCGCGAAGTGGGTGCGGCATTGATCGATATACATGGCCAACATG
AAACGCAGGAATTGATGGACGAGAAACAGCATGTCTATTTGCTGGATCAGTTTGCCGGCAAGTCAATTGCCAAAGCAAAA
GAAAGCTATTTGAATACCTACGACAAATACTTGAAGCTGAAGCGTGAATTTGCCTCGTACAATGAAAACGAACAGCAGAT
TGCACAAAAAATCGATTTGCTGACTTTTCAGCTGCGCGAAATCGAAGCTGCTGAATTGGTGGCAGGCGAAGAGGAAGAAC
TGCAGCAGGAACGCAAAAGGCTGCAGAATTTCAACAAAATCTACGAATCGGTATCCGCGGCCCACGAAGCGATTCAAGGT
GAATCGAAAGGGTTGGATTGGGTCGGTTCGGCGATGTCCGAACTCGAACACGCGGCTTCGGTCGACGAAGCGTTCAGCAG
CCAGTCGGAAACCTTGTCGAGCGCTTTTTACCAGCTCCAGGATGTCTCCACTGAAATCAAACGCGTGATTGACGACATGG
AATTTGATCCGGAACGTTTGAATGAAATTGAACAGCGCCTGACGCTGCTTCAATCGCTGAAACGGAAATACGGGGCTTCG
GTAGAAGATATGCTCTTGTATTATGAAACCCAGGTCGATGAACTCGACCGGCTCATCAACCGGGACCAGCGGTTGCAGCT
GGACCAGGAGAAGCTGAAAGAACTTACGGAAGACTTGCGGGTTGAAGCGGAAGAATTGACGATTCTTAGAAAAAAAGCGT
CCAAACAACTGGGACATGCCATAATGGAACAATTACAGGCTTTGCATATGGGCAAAGCGTCGTTCGAAGTGAACTTCAGT
TCGCTTCCGAATGGCCGCTTTGACCGGAATGGCCGCGACATGATCGCTTTTTATATTTCAACAAACCTGGGCGAGCCGCT
AAAGCCGTTGACAAAAGTGGCTTCTGGCGGAGAATTGTCGAGAATGATGCTCGCTTTAAAAACGATCTTTTCGAAACACC
AGGGCATTACGTCGATCATTTTCGATGAAGTGGATACGGGAGTCAGCGGCCGGGTGGCACAGGCCATTGCCGAGAAAATC
GCTGCCATTTCCGTCCATTCGCAAGTGCTGTGCATTTCGCATTTGCCGCAAGTAGCGGCGATGGCGGATCAGCATTTGTT
CATCGAAAAGAAAGTGGAAAAACAGCGCACGGTGACCAGTGTCCATGAATTGGATGGCCAGGAACGCACGGAAGAAATGA
GCCGCATGCTGTCCGGCGCGGAAATTACGGAATTGACATTGCAACATGCCGAAGAATTGTTGACGTTGGCGCGCGACAGA
AAACTGACGATGAGGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.91

100

0.529