Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QWY22_RS02385 Genome accession   NZ_CP129238
Coordinates   452100..453050 (+) Length   316 a.a.
NCBI ID   WP_300982781.1    Uniprot ID   -
Organism   Planococcus sp. N056     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 447100..458050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWY22_RS02370 (QWY22_02370) hflX 447591..448862 (+) 1272 WP_300982777.1 GTPase HflX -
  QWY22_RS02375 (QWY22_02375) - 449113..450834 (-) 1722 WP_300982778.1 ABC transporter ATP-binding protein -
  QWY22_RS02380 (QWY22_02380) - 451008..451868 (+) 861 WP_300982780.1 DUF6612 family protein -
  QWY22_RS02385 (QWY22_02385) ceuB 452100..453050 (+) 951 WP_300982781.1 ABC transporter permease Machinery gene
  QWY22_RS02390 (QWY22_02390) - 453043..453993 (+) 951 WP_300982782.1 iron chelate uptake ABC transporter family permease subunit -
  QWY22_RS02395 (QWY22_02395) - 453990..454751 (+) 762 WP_300982783.1 ABC transporter ATP-binding protein -
  QWY22_RS02400 (QWY22_02400) - 455057..456013 (+) 957 WP_300982785.1 siderophore ABC transporter substrate-binding protein -
  QWY22_RS02405 (QWY22_02405) - 456258..457325 (+) 1068 WP_300982786.1 ABC transporter permease -
  QWY22_RS02410 (QWY22_02410) - 457329..458000 (+) 672 WP_300982788.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34810.02 Da        Isoelectric Point: 9.9779

>NTDB_id=851781 QWY22_RS02385 WP_300982781.1 452100..453050(+) (ceuB) [Planococcus sp. N056]
MKKRYLIPALIILSVISLFVGVSSISITDLFDFQSEETQIFLISRLPRLVAILLAGAGMSMAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLLFANASMLEKMTVAFAFALAGTFLFMKILDRIKFKDAIFIPLVGLMFGNILSSVTTFFAYRADVI
QNMSAWLQGDFSMIMKGSYELLYISVPVFIIAYFYANRFTVAGMGEDFSKNLGMKYRSVVNIGLVLVALITATVVLTVGM
IPFLGLIIPNIVSIFKGDHLQKTLPHTAMLGAIFLLVCDILGRVLIYPYEISISLMVGVIGSFIFLFLLFRGKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=851781 QWY22_RS02385 WP_300982781.1 452100..453050(+) (ceuB) [Planococcus sp. N056]
ATGAAAAAAAGATATTTAATACCAGCATTAATCATACTGTCTGTTATTTCGCTGTTTGTCGGAGTAAGCAGTATCAGTAT
CACCGATCTGTTTGACTTCCAATCGGAAGAAACACAAATATTCCTGATCAGCCGACTGCCAAGGCTGGTTGCGATTTTGC
TGGCAGGTGCGGGAATGAGTATGGCAGGACTCATCATGCAGCAGTTAAGCCGCAATAAGTTTGTGTCTCCTACGACGGCA
GGTACATTAGATGCTACAAGGCTTGGGATTCTCGTTTCGATGCTGTTGTTCGCCAATGCATCGATGCTCGAGAAAATGAC
GGTAGCATTCGCTTTTGCACTTGCCGGAACGTTTCTATTCATGAAAATTCTTGACCGCATCAAATTTAAAGATGCTATAT
TCATTCCGCTGGTCGGTTTGATGTTCGGCAACATTCTTTCATCCGTCACCACATTCTTCGCTTACCGCGCTGACGTCATC
CAGAACATGTCCGCTTGGCTGCAAGGCGATTTCTCAATGATCATGAAAGGAAGTTACGAACTGCTTTACATCAGTGTTCC
GGTCTTTATCATCGCTTATTTTTATGCCAACCGGTTCACGGTTGCTGGAATGGGCGAGGATTTCTCCAAAAATCTGGGGA
TGAAATACCGCAGCGTTGTCAATATTGGACTGGTGCTGGTGGCGTTGATAACTGCTACAGTAGTGTTGACAGTCGGTATG
ATACCGTTTCTTGGATTGATTATCCCGAACATCGTTTCCATCTTCAAAGGAGACCATCTTCAAAAAACTTTGCCGCATAC
GGCGATGCTTGGAGCCATCTTCTTGCTGGTATGCGATATTTTAGGAAGAGTATTAATTTACCCGTATGAAATTTCCATCA
GCTTAATGGTCGGTGTCATCGGAAGCTTTATTTTCCTCTTCTTATTGTTTAGGGGGAAAGCATATGCGTGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.035

99.051

0.525