Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QWY22_RS00500 Genome accession   NZ_CP129238
Coordinates   102068..103444 (+) Length   458 a.a.
NCBI ID   WP_036803828.1    Uniprot ID   A0A1G8L2H3
Organism   Planococcus sp. N056     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 97068..108444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWY22_RS00480 (QWY22_00480) - 97463..97933 (+) 471 WP_300982480.1 CtsR family transcriptional regulator -
  QWY22_RS00485 (QWY22_00485) - 97945..98478 (+) 534 WP_300982481.1 UvrB/UvrC motif-containing protein -
  QWY22_RS00490 (QWY22_00490) - 98468..99559 (+) 1092 WP_300982482.1 protein arginine kinase -
  QWY22_RS00495 (QWY22_00495) clpC 99556..102003 (+) 2448 WP_036803827.1 ATP-dependent protease ATP-binding subunit ClpC -
  QWY22_RS00500 (QWY22_00500) radA 102068..103444 (+) 1377 WP_036803828.1 DNA repair protein RadA Machinery gene
  QWY22_RS00505 (QWY22_00505) - 103548..104651 (+) 1104 WP_074511514.1 PIN/TRAM domain-containing protein -
  QWY22_RS00510 (QWY22_00510) ispD 104665..105360 (+) 696 WP_053167073.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QWY22_RS00515 (QWY22_00515) ispF 105357..105857 (+) 501 WP_053167075.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  QWY22_RS00520 (QWY22_00520) gltX 105898..107361 (+) 1464 WP_053167077.1 glutamate--tRNA ligase -
  QWY22_RS00525 (QWY22_00525) cysE 107696..108358 (+) 663 WP_300982483.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49930.39 Da        Isoelectric Point: 6.9616

>NTDB_id=851779 QWY22_RS00500 WP_036803828.1 102068..103444(+) (radA) [Planococcus sp. N056]
MAKKKTKFICQSCGYESVKWMGKCPGCGEWNQMVEEVEVAAPKGTRGAFQHSATVSQKATPINSIKTQEEPRVETKMGEL
NRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSAMLANSGSRVLYISGEESIRQTKLRAERLDASSSELYIYAETNLELIH
HTIEEVAPDFVVVDSIQTVHHPEVTSAPGSVTQVRESTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYF
EGERHHTYRILRSVKNRFGSTNEIAIFEMLQSGLKEVLNPSELFLQERSSGAAGSTVVASMEGTRPILVEIQALVTPSSF
NYPKRMATGIDQNRVSLIMAVLEKRAGMLLQAQDAYIKVAGGVKLDEPAIDLAVLASIVSSYRDKAPNVYDCIIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRAIVPASNLGGWDYPEGIRVIGVESVNDALKEIFPQ

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=851779 QWY22_RS00500 WP_036803828.1 102068..103444(+) (radA) [Planococcus sp. N056]
ATGGCTAAGAAAAAAACGAAGTTTATTTGCCAATCGTGCGGTTATGAGTCAGTGAAATGGATGGGCAAATGCCCTGGGTG
CGGTGAGTGGAACCAGATGGTTGAGGAAGTGGAAGTGGCAGCTCCTAAAGGAACGCGCGGTGCCTTTCAGCATTCGGCTA
CTGTTTCTCAAAAAGCGACGCCGATCAACTCGATTAAAACACAGGAAGAACCGCGTGTAGAGACGAAGATGGGCGAGTTG
AACCGTGTGCTTGGCGGCGGCATTGTGCCGGGTTCACTGGTACTGATCGGTGGAGACCCGGGAATCGGGAAATCCACCTT
GCTGCTTCAAGTTTCAGCGATGCTCGCTAATAGCGGCAGCCGCGTCTTGTATATTTCAGGAGAAGAATCCATCCGCCAAA
CCAAGTTGCGTGCAGAACGATTGGATGCGTCTTCTTCGGAATTGTATATCTATGCAGAAACCAATCTGGAATTGATTCAC
CATACCATAGAAGAAGTAGCGCCTGATTTTGTGGTGGTTGACTCTATCCAAACGGTCCATCATCCGGAAGTGACTTCAGC
ACCGGGAAGCGTGACGCAAGTCCGGGAAAGTACAGCAGAATTGATGCGAATTGCGAAAACAAAAAATATCGCGATTTTCC
TGGTTGGCCACGTTACAAAAGAAGGGCAGATTGCCGGGCCGCGGATTCTTGAGCATATGGTGGATACTGTGCTTTATTTT
GAAGGCGAGCGCCATCATACGTACCGCATTTTGCGCAGCGTGAAAAACCGCTTTGGTTCAACGAATGAAATTGCGATTTT
TGAGATGCTGCAAAGCGGCTTGAAAGAAGTCTTGAATCCGTCGGAGCTGTTTTTGCAGGAGCGGTCGAGCGGTGCAGCAG
GGTCGACGGTTGTCGCTTCGATGGAAGGGACCCGTCCGATTCTCGTGGAGATTCAGGCATTGGTCACGCCTTCAAGCTTC
AACTATCCGAAACGGATGGCAACAGGAATTGATCAAAACCGTGTTTCGCTGATCATGGCGGTGCTGGAAAAACGCGCAGG
TATGCTTTTGCAGGCACAGGATGCTTATATCAAAGTGGCCGGCGGCGTGAAGCTTGACGAACCGGCAATCGATTTGGCGG
TGCTTGCAAGCATTGTTTCAAGCTACCGCGACAAAGCGCCGAATGTGTATGACTGCATCATCGGCGAAGTCGGGCTAACA
GGTGAAGTGCGCCGGGTCTCGCGGATTGAACAGCGGGTCCAGGAAGCAGCAAAACTTGGGTTTAAACGCGCGATTGTTCC
TGCTTCCAACTTAGGCGGCTGGGATTATCCGGAAGGCATTCGGGTCATTGGCGTTGAAAGTGTAAATGATGCATTAAAAG
AAATTTTTCCACAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-222)

Subunit ChlI of Mg-chelatase (ChlI)

(358-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G8L2H3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.068

98.908

0.723
  radA Streptococcus pneumoniae Rx1

63.816

99.563

0.635
  radA Streptococcus pneumoniae D39

63.816

99.563

0.635
  radA Streptococcus pneumoniae R6

63.816

99.563

0.635
  radA Streptococcus pneumoniae TIGR4

63.816

99.563

0.635
  radA Streptococcus mitis NCTC 12261

63.816

99.563

0.635
  radA Streptococcus mitis SK321

63.816

99.563

0.635