Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QWY21_RS08650 Genome accession   NZ_CP129236
Coordinates   1715793..1717490 (+) Length   565 a.a.
NCBI ID   WP_300988191.1    Uniprot ID   -
Organism   Planococcus sp. N022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1710793..1722490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWY21_RS08625 (QWY21_08625) xseB 1711193..1711429 (+) 237 WP_300988187.1 exodeoxyribonuclease VII small subunit -
  QWY21_RS08630 (QWY21_08630) - 1711426..1712304 (+) 879 WP_300988188.1 polyprenyl synthetase family protein -
  QWY21_RS08635 (QWY21_08635) dxs 1712505..1714409 (+) 1905 WP_300988685.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QWY21_RS08640 (QWY21_08640) - 1714406..1715227 (+) 822 WP_300988189.1 TlyA family RNA methyltransferase -
  QWY21_RS08645 (QWY21_08645) argR 1715325..1715774 (+) 450 WP_300988190.1 transcriptional regulator ArgR -
  QWY21_RS08650 (QWY21_08650) recN 1715793..1717490 (+) 1698 WP_300988191.1 DNA repair protein RecN Machinery gene
  QWY21_RS08655 (QWY21_08655) spo0A 1717525..1718292 (+) 768 WP_300988192.1 sporulation transcription factor Spo0A -
  QWY21_RS08660 (QWY21_08660) - 1718623..1719066 (+) 444 WP_300988193.1 plastocyanin/azurin family copper-binding protein -
  QWY21_RS08665 (QWY21_08665) - 1719134..1719367 (-) 234 WP_300988194.1 DUF2627 domain-containing protein -
  QWY21_RS08670 (QWY21_08670) - 1719490..1721535 (+) 2046 WP_300988195.1 sigma-54-dependent Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63636.41 Da        Isoelectric Point: 5.2818

>NTDB_id=851753 QWY21_RS08650 WP_300988191.1 1715793..1717490(+) (recN) [Planococcus sp. N022]
MLRELDIRNFAIIDTLSVSFSEGLTVLTGETGAGKSIIIDAVHLLAGGRGSQEFIRHGSNKAEIEGLFTLDNEKHPVFRK
LEELGLPSSEGDIVLRRELNDKGKNVCRINGKLVTISILREIGGVLIDIHGQHETQELMDEKQHLHLLDQFAGGSLSKAR
ESYAHTFEKYSRLKREFASYNENEQQIAQRIDLLTFQLREISAAELVAGEEEELMQERKKLQNFNKIYESVSAAHEAIQG
ESKGLDWVGSAMSELEHAASVDEQLVPHSETLSGAFYQIQDVSVEIKRIIDDMEFDPERLNQIEQRLALIQSLKRKYGAS
VEDILLYHETQADELDKLLNRDKRLQLDQEKLKELTEDLRIEAEELTMLRKKAAKKLGQAIMEQLQELHMGKASFEVNFE
ALPNNKFDRNGRDAISFYISTNLGEPLKPLTKVASGGELSRMMLALKTIFSKHQGVTSLIFDEVDTGVSGRVAQAIAEKI
AAISVHSQVLCISHLPQVAAMADQHLFIEKRVEKQRTITAVHELSGQERTEEMSRMLSGAEITELTLQHAEELLTLAHDR
KLTMK

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=851753 QWY21_RS08650 WP_300988191.1 1715793..1717490(+) (recN) [Planococcus sp. N022]
ATGCTGAGAGAACTGGACATCCGCAATTTTGCGATCATCGATACATTGTCAGTCAGTTTCTCTGAGGGGCTAACGGTCTT
GACAGGGGAGACAGGGGCGGGGAAATCGATTATAATAGATGCCGTCCATTTATTGGCTGGAGGACGCGGAAGCCAGGAAT
TTATCCGTCACGGGTCCAACAAAGCTGAAATCGAAGGCTTATTTACGCTCGACAATGAAAAGCATCCCGTTTTTCGCAAA
TTAGAGGAATTAGGCCTCCCATCTAGCGAAGGGGATATCGTGTTGCGACGCGAATTGAACGACAAAGGGAAGAATGTCTG
CCGGATCAATGGGAAATTGGTGACCATTTCCATTTTGCGTGAAATTGGCGGGGTGCTGATTGACATCCATGGCCAGCACG
AAACCCAGGAATTGATGGACGAAAAGCAGCACTTGCATTTATTGGACCAATTTGCCGGGGGCAGCTTGTCGAAAGCGCGT
GAAAGTTATGCCCACACTTTCGAGAAATACAGCCGGCTAAAACGAGAATTCGCGTCGTATAATGAAAATGAACAGCAAAT
TGCCCAGCGCATCGATTTGCTGACTTTTCAGCTGCGGGAAATCAGTGCGGCAGAGCTTGTAGCAGGCGAAGAGGAAGAGT
TGATGCAGGAACGCAAAAAGCTGCAGAATTTCAACAAAATCTACGAATCTGTCTCAGCTGCCCACGAAGCGATCCAAGGG
GAATCGAAAGGGCTGGATTGGGTGGGTTCTGCGATGTCTGAACTGGAGCATGCCGCTTCAGTTGATGAGCAGCTTGTGCC
TCATTCTGAAACCTTGTCCGGCGCATTTTATCAAATACAAGATGTGTCGGTGGAAATCAAGCGGATTATTGATGATATGG
AATTTGACCCCGAACGGCTGAATCAGATCGAACAGCGTTTAGCATTGATCCAATCCTTAAAAAGAAAGTACGGCGCGTCA
GTCGAAGATATTTTGTTGTACCACGAAACCCAGGCGGACGAACTGGACAAATTGTTGAACCGCGACAAACGGCTTCAGTT
GGACCAGGAAAAATTAAAAGAATTGACAGAAGATCTTCGCATTGAAGCGGAGGAATTGACAATGCTGCGGAAAAAAGCGG
CGAAAAAGCTTGGGCAAGCCATTATGGAGCAATTGCAAGAACTGCATATGGGCAAAGCGTCGTTTGAAGTGAATTTTGAA
GCCTTGCCGAACAACAAGTTTGACCGCAACGGCCGGGATGCCATTTCGTTCTATATTTCAACCAACTTGGGTGAACCATT
GAAACCGTTGACAAAAGTAGCTTCAGGCGGCGAGTTGTCCCGGATGATGCTTGCGTTAAAAACGATTTTCTCGAAACACC
AAGGCGTCACTTCGCTTATTTTTGACGAAGTCGACACCGGGGTCAGCGGGCGGGTGGCGCAGGCAATAGCTGAAAAAATT
GCGGCGATCTCGGTCCATTCGCAAGTGCTCTGCATTTCTCATTTGCCACAAGTTGCTGCCATGGCAGACCAGCACTTGTT
CATCGAAAAACGAGTTGAAAAACAACGGACCATCACTGCTGTCCATGAGTTGAGCGGGCAGGAGCGCACGGAAGAAATGA
GCCGGATGCTGTCCGGGGCAGAAATAACGGAACTGACGCTGCAGCACGCAGAAGAGCTGCTGACGCTTGCGCATGACCGA
AAACTCACGATGAAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.91

100

0.529